View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20636_low_1 (Length: 662)

Name: NF20636_low_1
Description: NF20636
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20636_low_1
NF20636_low_1
[»] chr2 (2 HSPs)
chr2 (77-651)||(43612052-43612640)
chr2 (1-42)||(43612675-43612716)


Alignment Details
Target: chr2 (Bit Score: 448; Significance: 0; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 448; E-Value: 0
Query Start/End: Original strand, 77 - 651
Target Start/End: Complemental strand, 43612640 - 43612052
Alignment:
Q  77 atctaaaccgatacccaaaggatatatttagtttgatttttcaagttaattggatttatc-------gttggaaaccatacatacata----ttacattc 165  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||    ||||||||    
T  43612640 atctaaaccgatacacaaaggatatatttagtttgatttttcaagttaattggatttatcaaatcccgttggaaaccatacatacatacatattacattc 43612541  T
Q  166 atacacgtacctttgcacatttgagtctctcattcattctcaatttctcatatccaaatgtcatcatactcatattattatcatcctttccccaccagca 265  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43612540 atacacgtacctttgcacatttgagtctctcattcattctcaatttctcatatccaaatgtcatcatactcatattattatcatcctttccccaccagca 43612441  T
Q  266 aagcttttccaatttggcagccactgtcacagcagcagcactctttcccatactacgcccgccaccggcagcagttactctcttctccacttctcagaca 365  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  43612440 aagcttttccaatttggcagccactgtcacagcaacagcactctttcccatactacggccgccaccggcagcagttactctcttctccacttctcagaca 43612341  T
Q  366 acacaggcttccttgttcaaggcttcaggaaatagtatctgttgcctcagagtcacaagaacaagtgaggcagagtgaaaaccccaacaacaagaaaaac 465  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43612340 acacaggcttccttgttcaaggcttcaggaaatagtatctgttgcctcagagtcacaagaacaagtgaggcagagtgaaaaccccaacaacaagaaaaac 43612241  T
Q  466 tccaagnnnnnnnnnnnnnnnnnnnnagaag---tgggaatttctaaaatacaagtgcctagacagaaacacatccctgtttccaagtctctgcttctag 562  Q
    ||||||                     ||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||    
T  43612240 tccaaggatgatgatgatgatgatgatgaagaagtgggaatttctaaaatacaagtgcctagacagaaacacatccctgtttccaagtcccagcttctag 43612141  T
Q  563 atgcaatcctctctaacatgcttcatcaagatactgctcatcactttcgccttctcacctcgtaagtactatcaatttcctatattcat 651  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43612140 atgcaatcctctctaacatgcttcatcaagatactgctcatcactttcgccttctcacctcgtaagtactatcaatttcctatattcat 43612052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 43612716 - 43612675
Alignment:
Q  1 gggtgactgacttctctcaatcgtcacccgaaccaataatga 42  Q
    |||||||||| |||||||||||||||||||||||||||||||    
T  43612716 gggtgactgagttctctcaatcgtcacccgaaccaataatga 43612675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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