View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20636_low_2 (Length: 477)
Name: NF20636_low_2
Description: NF20636
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20636_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 192; Significance: 1e-104; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 258 - 461
Target Start/End: Complemental strand, 2220600 - 2220397
Alignment:
| Q |
258 |
cacaaatgagtaatgtgagaaaaatcatcactgcactgccattatatatgaatggtgagatttagaacttctttcaaaagaattaactaacaagaaagag |
357 |
Q |
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| T |
2220600 |
cacaaatgagtaatgtgagaaaaatcatcactgcactgccattatatatgaatggtgagatttagaactgctttcaaaagaattaactaacaagaaagag |
2220501 |
T |
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| Q |
358 |
tgaggagtgtctaactaatcaattataaacattaaaacaaacagatataattcatattcacagcttattgtataaatctttgaaaacatcactaagtaaa |
457 |
Q |
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| T |
2220500 |
taaggagtgtccaactaatcaattataaacattaaaacaaacagatataattcatattcacagcttattgtataaatctttgaaaacatcactaagtaaa |
2220401 |
T |
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| Q |
458 |
aaac |
461 |
Q |
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|||| |
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| T |
2220400 |
aaac |
2220397 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 6 - 200
Target Start/End: Complemental strand, 2221086 - 2220903
Alignment:
| Q |
6 |
gtgagatgaaaccttgatggatcagattttgatgacgttggttgtgtttgaatttgaattgatttcttcatgcctatgtatgacaagtgttggtagctgc |
105 |
Q |
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| T |
2221086 |
gtgaaatgaaaccttgatggagcagattttgatgacgttggttgtgtttgaatt------gatttcttcatgcctattaatgacaagtgttggtagctgc |
2220993 |
T |
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| Q |
106 |
aactcagtagcgaatatagaatatgaaacacatggaatggaatggaaggaaggagaggcttaattggagtcttcttcgagctataaagtggatag |
200 |
Q |
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| T |
2220992 |
aactgagtagcgaatatagaatatgaaacacatggaat-----ggaaggaaggagaggcttaattggagtcttcttcgagctataaagtggatag |
2220903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 342 - 461
Target Start/End: Complemental strand, 2207522 - 2207403
Alignment:
| Q |
342 |
aactaacaagaaagagtgaggagtgtctaactaatcaattataaacattaaaacaaacagatataattcatattcacagcttattgtataaatctttgaa |
441 |
Q |
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||||||||||||||||| ||||||||| ||| |||||||||||||||||||||||||||| ||||||||| |||||| |||||||||||||||||||||| |
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| T |
2207522 |
aactaacaagaaagagtaaggagtgtccaaccaatcaattataaacattaaaacaaacagttataattcacattcactgcttattgtataaatctttgaa |
2207423 |
T |
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| Q |
442 |
aacatcactaagtaaaaaac |
461 |
Q |
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| T |
2207422 |
aacatcactaagtaaaaaac |
2207403 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 236 - 295
Target Start/End: Complemental strand, 2207682 - 2207623
Alignment:
| Q |
236 |
gttaacacaaaagagtaaaacccacaaatgagtaatgtgagaaaaatcatcactgcactg |
295 |
Q |
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| T |
2207682 |
gttaccacaaaagagaaaatcccacaaatgagtaacatgagaaaaattatcactgcactg |
2207623 |
T |
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