View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20636_low_3 (Length: 474)
Name: NF20636_low_3
Description: NF20636
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20636_low_3 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 432; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 432; E-Value: 0
Query Start/End: Original strand, 18 - 474
Target Start/End: Complemental strand, 35697042 - 35696586
Alignment:
| Q |
18 |
ccaccacagacggtgaaggtccaacatccgaacacaacgatccattcgcgttcacgatcacacctttcttcccagtaggaacactaatttcagactcaca |
117 |
Q |
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| T |
35697042 |
ccaccacagacggtgaaggtccaacatccgaacacaacgatccattcgcgttcacgatcacacctttcttcccagtaggaacactaatttcagactcaca |
35696943 |
T |
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| Q |
118 |
ttcaccaccgtaaccgttttttccattaggattataaacataatcattaatcgtcgaatcannnnnnncgctttgtgatcgttgaagcgtcatcatatgc |
217 |
Q |
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| T |
35696942 |
ttcaccaccgtaaccgttttttccattaggattataaacataatcattaatcgtcgaatcatttttttcgctttgtgatcgttgaagcgtcatcatatgc |
35696843 |
T |
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| Q |
218 |
ttggcatcacaattactgttattgtcatagttttgattctgtttgttaggcttcgttatatcataatattcaacagccgaagaactaagctccgaataca |
317 |
Q |
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| T |
35696842 |
ttggcatcacaattactgttattgtcatagttttgattctgtttgttaggcttcgttatatcataatattcaacagccgaagaactaagctccgaataca |
35696743 |
T |
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| Q |
318 |
tcggcatgcttctcatcgtagcatcgacaacattaacaccaatgttaagaatcccttgtggacgaccagaaggtcgacgaacctgcaaggcaacgaaacg |
417 |
Q |
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| T |
35696742 |
tcggcatgcttctcatcgtagcatcaacaacattaacaccaatgttaagaatcccttgtggacgaccagaaggtcgacgaacctgcaaggcaacgaaacg |
35696643 |
T |
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| Q |
418 |
aatcttggattttctgttacgaggtaaaagattgttgagatgaacagcgacagttcc |
474 |
Q |
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| T |
35696642 |
aatcttggattttctgttacgaggtaaaagattgttgagatgaacagcgacagttcc |
35696586 |
T |
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Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 305 - 384
Target Start/End: Original strand, 47725280 - 47725359
Alignment:
| Q |
305 |
agctccgaatacatcggcatgcttctcatcgtagcatcga-caacattaacaccaatgttaagaatcccttgtggacgacc |
384 |
Q |
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| T |
47725280 |
agctccgaataaagtggcatgcttctcatcgtgctatcgagcaacgt-aacaccgatgttaagaatcccttgtggacgacc |
47725359 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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