View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20636_low_8 (Length: 309)

Name: NF20636_low_8
Description: NF20636
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20636_low_8
NF20636_low_8
[»] chr5 (12 HSPs)
chr5 (144-292)||(30679307-30679455)
chr5 (203-292)||(30057785-30057874)
chr5 (203-292)||(30747219-30747308)
chr5 (203-292)||(30715531-30715620)
chr5 (144-292)||(30244814-30244962)
chr5 (140-247)||(29869617-29869724)
chr5 (138-252)||(29850768-29850881)
chr5 (144-176)||(30057883-30057915)
chr5 (8-44)||(30398558-30398594)
chr5 (144-176)||(30715490-30715522)
chr5 (138-167)||(30398046-30398075)
chr5 (144-176)||(30747317-30747349)
[»] chr1 (1 HSPs)
chr1 (145-227)||(596744-596826)


Alignment Details
Target: chr5 (Bit Score: 113; Significance: 3e-57; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 144 - 292
Target Start/End: Original strand, 30679307 - 30679455
Alignment:
Q  144 atagcagcaatggttcctgatagagttctctccttggctttgcttaaggcaacgggtgaagattttcaatgttttccagaggtatatgtcccttttataa 243  Q
    |||||||||||||||||||||||||||||||||||||||||||| || ||||| |||| ||||||||||||||| |||||||||||||||||||||||||    
T  30679307 atagcagcaatggttcctgatagagttctctccttggctttgctaaatgcaacaggtggagattttcaatgtttgccagaggtatatgtcccttttataa 30679406  T
Q  244 ttctttgaacattttaatttatttttatggcactatgattagagcattg 292  Q
    ||||||||||| ||| ||||||||||| |||||| ||||||||||||||    
T  30679407 ttctttgaacaatttgatttatttttacggcactgtgattagagcattg 30679455  T

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Target: chr5; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 203 - 292
Target Start/End: Complemental strand, 30057874 - 30057785
Alignment:
Q  203 agattttcaatgttttccagaggtatatgtcccttttataattctttgaacattttaatttatttttatggcactatgattagagcattg 292  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| ||||||||||||||    
T  30057874 agattttcaatgttttccagaggtatatgtcccttttataattctttgaacattttgatttatttttacggcactgtgattagagcattg 30057785  T

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Target: chr5; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 203 - 292
Target Start/End: Complemental strand, 30747308 - 30747219
Alignment:
Q  203 agattttcaatgttttccagaggtatatgtcccttttataattctttgaacattttaatttatttttatggcactatgattagagcattg 292  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| ||||||||||||||    
T  30747308 agattttcaatgttttccagaggtatatgtcccttttataattctttgaacattttgatttatttttacggcactgtgattagagcattg 30747219  T

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Target: chr5; HSP #4
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 203 - 292
Target Start/End: Original strand, 30715531 - 30715620
Alignment:
Q  203 agattttcaatgttttccagaggtatatgtcccttttataattctttgaacattttaatttatttttatggcactatgattagagcattg 292  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||| |||||| ||||||||||||||    
T  30715531 agattttcaatgttttccagaggtatatctcccttttataattctttgaacattttgatttatttttacggcactgtgattagagcattg 30715620  T

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Target: chr5; HSP #5
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 144 - 292
Target Start/End: Original strand, 30244814 - 30244962
Alignment:
Q  144 atagcagcaatggttcctgatagagttctctccttggctttgcttaaggcaacgggtgaagattttcaatgttttccagaggtatatgtcccttttataa 243  Q
    ||||||||||  |||| ||||||||||||||||||||||||||| || |||| | ||| || ||||||||||||||||||||||| ||||||||| ||||    
T  30244814 atagcagcaacagttcttgatagagttctctccttggctttgctaaatgcaatgagtggaggttttcaatgttttccagaggtat-tgtccctttcataa 30244912  T
Q  244 ttctttg-aacattttaatttatttttatggcactatgattagagcattg 292  Q
    |||| || ||  |||| |||||||||||  ||||||||||||||||||||    
T  30244913 ttctatgaaatgttttgatttatttttacagcactatgattagagcattg 30244962  T

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Target: chr5; HSP #6
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 140 - 247
Target Start/End: Complemental strand, 29869724 - 29869617
Alignment:
Q  140 tatgatagcagcaatggttcctgatagagttctctccttggctttgcttaaggcaacgggtgaagattttcaatgttttccagaggtatatgtccctttt 239  Q
    ||||||||||||| |||||||||||||||| |||| |||||||||||| || | || ||||| || |||||||||||||||| |||||||||||||||||    
T  29869724 tatgatagcagcagtggttcctgatagagtcctctacttggctttgctaaatgtaaagggtggaggttttcaatgttttccaaaggtatatgtccctttt 29869625  T
Q  240 ataattct 247  Q
    ||| ||||    
T  29869624 atagttct 29869617  T

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Target: chr5; HSP #7
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 138 - 252
Target Start/End: Complemental strand, 29850881 - 29850768
Alignment:
Q  138 tctatgatagcagcaatggttcctgatagagttctctccttggctttgcttaaggcaacgggtgaagattttcaatgttttccagaggtatatgtccctt 237  Q
    |||||||||| || ||||||||||||||||||||||| |||||||||||| || |||| ||||| || |||||||||||||||| ||||||||||| |||    
T  29850881 tctatgatag-agtaatggttcctgatagagttctctacttggctttgctaaatgcaaagggtggaggttttcaatgttttccaaaggtatatgtcgctt 29850783  T
Q  238 ttataattctttgaa 252  Q
    ||||| |||| ||||    
T  29850782 ttatagttctatgaa 29850768  T

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Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 144 - 176
Target Start/End: Complemental strand, 30057915 - 30057883
Alignment:
Q  144 atagcagcaatggttcctgatagagttctctcc 176  Q
    |||||||||||||||||||||||||||||||||    
T  30057915 atagcagcaatggttcctgatagagttctctcc 30057883  T

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Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 8 - 44
Target Start/End: Complemental strand, 30398594 - 30398558
Alignment:
Q  8 cggagctccgtgcccattagcaagtctgatcatcaag 44  Q
    |||||||| ||||||||||||||||||||||||||||    
T  30398594 cggagctctgtgcccattagcaagtctgatcatcaag 30398558  T

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Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 144 - 176
Target Start/End: Original strand, 30715490 - 30715522
Alignment:
Q  144 atagcagcaatggttcctgatagagttctctcc 176  Q
    |||||||||||||||||||||||||||||||||    
T  30715490 atagcagcaatggttcctgatagagttctctcc 30715522  T

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Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 138 - 167
Target Start/End: Complemental strand, 30398075 - 30398046
Alignment:
Q  138 tctatgatagcagcaatggttcctgataga 167  Q
    ||||||||||||||||||||||||||||||    
T  30398075 tctatgatagcagcaatggttcctgataga 30398046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 144 - 176
Target Start/End: Complemental strand, 30747349 - 30747317
Alignment:
Q  144 atagcagcaatggttcctgatagagttctctcc 176  Q
    ||||||||||| |||||||||||||||||||||    
T  30747349 atagcagcaattgttcctgatagagttctctcc 30747317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 8e-18; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 145 - 227
Target Start/End: Original strand, 596744 - 596826
Alignment:
Q  145 tagcagcaatggttcctgatagagttctctccttggctttgcttaaggcaacgggtgaagattttcaatgttttccagaggta 227  Q
    |||||||||||||||||||||||||||||||| |||| ||||| || ||||| ||||  | |||||||||||||||| |||||    
T  596744 tagcagcaatggttcctgatagagttctctccatggcattgctcaatgcaacaggtggtggttttcaatgttttccaaaggta 596826  T

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