View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20637_low_2 (Length: 663)
Name: NF20637_low_2
Description: NF20637
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20637_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 615; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 615; E-Value: 0
Query Start/End: Original strand, 16 - 650
Target Start/End: Original strand, 29982498 - 29983132
Alignment:
| Q |
16 |
tcttatttagtccataaactatatggaaataataaatatcatatgaaatattttatgttagacaatacattatttgaaatatatctcattagttaccaat |
115 |
Q |
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| T |
29982498 |
tcttatttagtccataaactatatggaaataataaatattatatgaaatcttttatgttagacaatacattatttgaaatatatctcattagttacctat |
29982597 |
T |
|
| Q |
116 |
atcctgtgtcactatataacgacaaagaccaatttaacggatttcatataatttagagactaatttgtgatccttgccaatgttcggctaaaccctataa |
215 |
Q |
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| T |
29982598 |
atcctgtgtcactatataacgacaaagaccaatttaacggatttcatataatttagatactaatttgtgatccttgccaatgttcggctaaaccctataa |
29982697 |
T |
|
| Q |
216 |
gtgcttaattaagctgattaccttgcgatccttgccgatgttgagaacaatgagctccaccaatcccttggtgttcatgagaaatccaagggtcaaagct |
315 |
Q |
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| T |
29982698 |
gtgcttaattaagctgattaccttgcgatccttgccgatgttgagaacaatgagctccaccaatcccttggtgttcatgagaaatccaagggtcaaagct |
29982797 |
T |
|
| Q |
316 |
tctctaaaaggaatcttacacagcaatgacacaactaatgtgccaacaactttaccaaagcaagcagtaaatataacaaggattaataatccccaagaaa |
415 |
Q |
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| T |
29982798 |
tctctaaaaggaatcttacacagcaatgacacaactaatgtgccaacaactttaccaaagcaagcagtaaatataacaaggattaataatccccaagaaa |
29982897 |
T |
|
| Q |
416 |
gtgctccactaatagtagctacattagtcttcaatccactagacacaaaataaagtggcaacaaaagactcattacaagatcctcaatcttctcagtcaa |
515 |
Q |
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| T |
29982898 |
gtgctccactaatagtagctacattagtcttcaatccactagacacaaaataaagtggcaacaaaagactcattacaagatcctcaatcttctcagtcaa |
29982997 |
T |
|
| Q |
516 |
aatactagcaaaaggaccttccttaggaacaacaatgccagctacaaaagctccaaagagagcatgaataccaatagtatcagttaaaaaactacaaccc |
615 |
Q |
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| T |
29982998 |
aatactagcaaaaggaccttccttaggaacaacaatgccagctacaaaagctccaaagagagcatgaataccaatagtatcagttaaaaaactacaaccc |
29983097 |
T |
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| Q |
616 |
aaaaccagtgtcaatgtgatgcaaatgtaaatctc |
650 |
Q |
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| T |
29983098 |
aaaactagtgtcaatgtgatgcaaatgtaaatctc |
29983132 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 133; E-Value: 8e-69
Query Start/End: Original strand, 234 - 646
Target Start/End: Complemental strand, 51404111 - 51403699
Alignment:
| Q |
234 |
taccttgcgatccttgccgatgttgagaacaatgagctccaccaatcccttggtgttcatgagaaatccaagggtcaaagcttctctaaaaggaatctta |
333 |
Q |
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||||||||||||||| |||||||||||||||||||| || |||||||||||||||||||||||||||||||| | | ||||||||||||||| | ||| |
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| T |
51404111 |
taccttgcgatcctttccgatgttgagaacaatgagttcaaccaatcccttggtgttcatgagaaatccaagtgcaagagcttctctaaaaggcaccttg |
51404012 |
T |
|
| Q |
334 |
cacagcaatgacacaactaatgtgccaacaactttaccaaagcaagcagtaaatataacaaggattaataatccccaagaaagtgctccactaatagtag |
433 |
Q |
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|| |||||||| || | ||| ||||| | ||| ||||||||||||||||||||||| || | ||||| | ||||||||| ||||||| ||||||| |
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| T |
51404011 |
catagcaatgatactgagattgtaccaacgatttttccaaagcaagcagtaaatataactagtaataatagtgcccaagaaacccctccacttatagtag |
51403912 |
T |
|
| Q |
434 |
ctacattagtcttcaatccactagacacaaaataaagtggcaacaaaagactcattacaagatcctcaatcttctcagtcaaaatactagcaaaaggacc |
533 |
Q |
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| T |
51403911 |
ccacatttgtcttcaaaccactagaagcaaaatagagtggcaaaaagattccagacacaagatcttcaatcttctcaattaaaacaccagcaaaaggacc |
51403812 |
T |
|
| Q |
534 |
ttccttaggaacaacaatgccagctacaaaagctccaaagagagcatgaataccaatagtatcagttaaaaaactacaacccaaaaccagtgtcaatgtg |
633 |
Q |
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|| ||||| | || || ||| |||||||| ||||| | |||||||| |||||||||||||| | |||||||||| ||||||||| |||||||||| |
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| T |
51403811 |
atctttaggcataattataccaataacaaaagcaccaaataatgcatgaattccaatagtatcagtaacaaaactacaagccaaaaccaatgtcaatgtg |
51403712 |
T |
|
| Q |
634 |
atgcaaatgtaaa |
646 |
Q |
| |
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|| |||||||||| |
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| T |
51403711 |
atacaaatgtaaa |
51403699 |
T |
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