View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20637_low_4 (Length: 310)
Name: NF20637_low_4
Description: NF20637
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20637_low_4 |
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| [»] chr8 (7 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 254; Significance: 1e-141; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 13 - 310
Target Start/End: Original strand, 11996096 - 11996393
Alignment:
| Q |
13 |
aatattaatcaaaatgaagcggttccgttctgactatagaaaaggccagatggactaccattgggaagtagtgctaacctaacaggatttgtagctcctt |
112 |
Q |
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| T |
11996096 |
aatattaatcaaaatgaagcgattccgttctgactatagaaaaggccagatggactacctttgggaagtagtgctaacctaacaggatttgtagctcctt |
11996195 |
T |
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| Q |
113 |
cttcaactgtcaatataccagtattagtagtcatatcagtcttaacataaccagggcaaacacaattgatgcagaaattcggatatttctttgcaaggat |
212 |
Q |
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| T |
11996196 |
cttcaactgtcaatataccagtattagtagtcatatcagtcttaacataaccagggcaaacacaattgatgcagaaattcggatatttctttgcaagaat |
11996295 |
T |
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| Q |
213 |
tcttgtatatgcattcatagaagctttagcaacagtataggcagctgcaaacctaggccaaccttttcttcctaaagtcccttgttcaaaatctttga |
310 |
Q |
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| T |
11996296 |
tattgtataggcattcatagaagctttagcaacagtataggcagctgcaaacctaggccaacctttactttctaaggaaccttcttcaaaatctttga |
11996393 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 40 - 310
Target Start/End: Original strand, 12007860 - 12008130
Alignment:
| Q |
40 |
ttctgactatagaaaaggccagatggactaccattgggaagtagtgctaacctaacaggatttgtagctccttcttcaactgtcaatataccagtattag |
139 |
Q |
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| T |
12007860 |
ttctggctatagaaaaggccagatggactaccattgggaagtagtgctaacctaacaggatctgcagctccttcttctactgtgaagagaccggtattag |
12007959 |
T |
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| Q |
140 |
tagtcatatcagtcttaacataaccagggcaaacacaattgatgcagaaattcggatatttctttgcaaggattcttgtatatgcattcatagaagcttt |
239 |
Q |
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| T |
12007960 |
cagttatatcggttttgacataaccagggcaaacacaattgatgcagaaaccagggtacttttttgcaataattcttgtataggcattcatagaagcttt |
12008059 |
T |
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| Q |
240 |
agcaacagtataggcagctgcaaacctaggccaaccttttcttcctaaagtcccttgttcaaaatctttga |
310 |
Q |
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| T |
12008060 |
accaacaacataggcagctgcaaatctaggccaacattttctttctaaggacccttcttcaaaatctttga |
12008130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 19 - 310
Target Start/End: Original strand, 11986553 - 11986844
Alignment:
| Q |
19 |
aatcaaaatgaagcggttccgttctgactatagaaaaggccagatggactaccattgggaagtagtgctaacctaacaggatttgtagctccttcttcaa |
118 |
Q |
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| T |
11986553 |
aatcaaaatgaagaggcttcgttccgaacatagaagtggccagatggactaccgctgggaagtaatgctaacctaaccggatgagcagcaccttcttcta |
11986652 |
T |
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| Q |
119 |
ctgtcaatataccagtattagtagtcatatcagtcttaacataaccagggcaaacacaattgatgcagaaattcggatatttctttgcaaggattcttgt |
218 |
Q |
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| T |
11986653 |
ccgtgaagaaaccggtattagcagttatatcggttttgacataaccagggcaaacacaattgatgcagaagttaggatacttctttgcagtaattcttgt |
11986752 |
T |
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| Q |
219 |
atatgcattcatagaagctttagcaacagtataggcagctgcaaacctaggccaaccttttcttcctaaagtcccttgttcaaaatctttga |
310 |
Q |
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| T |
11986753 |
gtaggcattcatagaagctttagcaatagtatagggagctataaacctaggccaaccttttctttctaaggacccttgttcaaaatctttga |
11986844 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 47 - 310
Target Start/End: Original strand, 12002641 - 12002904
Alignment:
| Q |
47 |
tatagaaaaggccagatggactaccattgggaagtagtgctaacctaacaggatttgtagctccttcttcaactgtcaatataccagtattagtagtcat |
146 |
Q |
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| T |
12002641 |
tatagtaaacgccggatggactaccattgggaagcagtgctaacctaacaggatgagcagcaccttcttccactgtgaagaaaccggtattagcagttat |
12002740 |
T |
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| Q |
147 |
atcagtcttaacataaccagggcaaacacaattgatgcagaaattcggatatttctttgcaaggattcttgtatatgcattcatagaagctttagcaaca |
246 |
Q |
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| T |
12002741 |
atcggttttgacataaccagggcaaacacaattgatgcagaagttaggatacttctttgcagtaattcttgtgtaagcattcatagaagctttagcaaca |
12002840 |
T |
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| Q |
247 |
gtataggcagctgcaaacctaggccaaccttttcttcctaaagtcccttgttcaaaatctttga |
310 |
Q |
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| T |
12002841 |
gtataggcagccaaatatctaggccaaccttttctttctaaggacccttcttcaaaatctttga |
12002904 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 47 - 241
Target Start/End: Original strand, 11982600 - 11982794
Alignment:
| Q |
47 |
tatagaaaaggccagatggactaccattgggaagtagtgctaacctaacaggatttgtagctccttcttcaactgtcaatataccagtattagtagtcat |
146 |
Q |
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||||||| ||||||||||||| ||||||||||| | ||||| | | ||| | | | ||| ||||||||| | || || | |||||||||| ||| || |
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| T |
11982600 |
tatagaatcggccagatggacttccattgggaagcaatgctagcttgacaacactagcagcaccttcttcagcagttaagagaccagtattaccagttat |
11982699 |
T |
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| Q |
147 |
atcagtcttaacataaccagggcaaacacaattgatgcagaaattcggatatttctttgcaaggattcttgtatatgcattcatagaagctttag |
241 |
Q |
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| T |
11982700 |
atctgtgatgacataaccagggcaaatactattgatgcataaagtaggaaaattcttagcaagaattcttgtataagcattcatagcagctttag |
11982794 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 56 - 241
Target Start/End: Original strand, 11977975 - 11978160
Alignment:
| Q |
56 |
ggccagatggactaccattgggaagtagtgctaacctaacaggatttgtagctccttcttcaactgtcaatataccagtattagtagtcatatcagtctt |
155 |
Q |
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| T |
11977975 |
ggccagatggacttccattgggaagcaatgctagcttcacaacactagcagcaccttcttcagcagttaagagaccagtattaccagttatatctgtgat |
11978074 |
T |
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| Q |
156 |
aacataaccagggcaaacacaattgatgcagaaattcggatatttctttgcaaggattcttgtatatgcattcatagaagctttag |
241 |
Q |
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| T |
11978075 |
gacataaccagggcaaatactattgatgcataaagtaggaaaattcttagcaagaattcttgtataagcattcatagcagctttag |
11978160 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 159 - 241
Target Start/End: Original strand, 11972269 - 11972351
Alignment:
| Q |
159 |
ataaccagggcaaacacaattgatgcagaaattcggatatttctttgcaaggattcttgtatatgcattcatagaagctttag |
241 |
Q |
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| T |
11972269 |
ataaccagggcaaacactattgatgcatatagtaggaaattttttagcaagaattcttgtatatgcattcatagcagctttag |
11972351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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