View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20637_low_5 (Length: 294)
Name: NF20637_low_5
Description: NF20637
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20637_low_5 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 244; Significance: 1e-135; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 294
Target Start/End: Original strand, 36353663 - 36353962
Alignment:
| Q |
1 |
aatattacatagagttcacacacactgacctccaacgtgaaccgat----gaagcaacgacacaagcataaatattagacacaatactgcactagctcct |
96 |
Q |
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| T |
36353663 |
aatattacatagagttcacacacactgacctccaacgtcaaccgatcgatgaagcaacgacacaagcataaatattagacacaatactgcactagctcct |
36353762 |
T |
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| Q |
97 |
acac--taatatttctttaacaaaacgagtggttgaacgtaactatatatgtcagtatcatgtcggtatcagacatccaatctgaagtgtcgattctata |
194 |
Q |
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|||| |||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
36353763 |
acacaataatatttctttaacaaaacaagtggttgaacgtaactatatatatcagtatcatgtcggtatcagacctccaatctgaagtgtcgattctata |
36353862 |
T |
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| Q |
195 |
tagatgccaactagttgagaattagatcttcatcttgtagcgaaaggaaaccaacgttcatgaaaagaagactgataagaaatcatagacaagaggaaca |
294 |
Q |
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||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
36353863 |
tagataccaactagttgagaatgagatcttcatcttgtagcgaaaggaaaccaacgttcatgaaaagaagactgataagaaatcataaacaagaggaaca |
36353962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 237 - 270
Target Start/End: Original strand, 36355191 - 36355224
Alignment:
| Q |
237 |
aaaggaaaccaacgttcatgaaaagaagactgat |
270 |
Q |
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| T |
36355191 |
aaaggaaaccaacgttcatgaaaagaagactgat |
36355224 |
T |
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