View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20637_low_6 (Length: 290)
Name: NF20637_low_6
Description: NF20637
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20637_low_6 |
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| [»] scaffold0215 (1 HSPs) |
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Alignment Details
Target: scaffold0215 (Bit Score: 144; Significance: 9e-76; HSPs: 1)
Name: scaffold0215
Description:
Target: scaffold0215; HSP #1
Raw Score: 144; E-Value: 9e-76
Query Start/End: Original strand, 125 - 284
Target Start/End: Original strand, 22500 - 22659
Alignment:
| Q |
125 |
ccttctttgcccaggtgaaccactcaatccgtgaagctttcgatttccaatcctcaaacatggaattcagttccttcgaaaatctccaaccatctttcac |
224 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22500 |
ccttctttgcccaggtgaaccactcaatccctgaagctttcgaattccaatcctcaaacatggaattcagttccttcgaaaatctccaaccatctttcac |
22599 |
T |
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| Q |
225 |
ggttcccagaaccctgaaaatcccctttcttacttcttcgattctaccctagaataatct |
284 |
Q |
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| T |
22600 |
ggttcccagaaccctgaaaataccctttcttacttcttcgattctaccctcgaataatct |
22659 |
T |
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Target: chr6 (Bit Score: 141; Significance: 6e-74; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 128 - 284
Target Start/End: Original strand, 16352684 - 16352840
Alignment:
| Q |
128 |
tctttgcccaggtgaaccactcaatccgtgaagctttcgatttccaatcctcaaacatggaattcagttccttcgaaaatctccaaccatctttcacggt |
227 |
Q |
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| T |
16352684 |
tctttgcccaggtgaaccactcaatccctgaagctttcgaattccaatcctcaaacatggaattcagttccttcgaaaatctccaaccatctttcacggt |
16352783 |
T |
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| Q |
228 |
tcccagaaccctgaaaatcccctttcttacttcttcgattctaccctagaataatct |
284 |
Q |
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| T |
16352784 |
tcccagaaccctgaaaatcccctttcttccttcttcgattctaccctcgaataatct |
16352840 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 125 - 284
Target Start/End: Complemental strand, 18851908 - 18851749
Alignment:
| Q |
125 |
ccttctttgcccaggtgaaccactcaatccgtgaagctttcgatttccaatcctcaaacatggaattcagttccttcgaaaatctccaaccatctttcac |
224 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||| || ||||||||||||||||||||||| |
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| T |
18851908 |
ccttctttgcccaggtgaaccactcaatccctgaagctttcgaattccaatcctcaaacatggaattcagttcttttgaaaatctccaaccatctttcac |
18851809 |
T |
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| Q |
225 |
ggttcccagaaccctgaaaatcccctttcttacttcttcgattctaccctagaataatct |
284 |
Q |
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| T |
18851808 |
ggttcccagaaccctgaaaatcccctttcttacttcttcgattctaccctcgaataatct |
18851749 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 18 - 73
Target Start/End: Complemental strand, 18852013 - 18851958
Alignment:
| Q |
18 |
atatgaaacaaaattttccccttccaattcaaataataacaaagaaacttcttgaa |
73 |
Q |
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| T |
18852013 |
atatgaaacaaaattttccccttccagttcaaataataacaaagaaacttcttgaa |
18851958 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 21 - 64
Target Start/End: Original strand, 16352628 - 16352671
Alignment:
| Q |
21 |
tgaaacaaaattttccccttccaattcaaataataacaaagaaa |
64 |
Q |
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| T |
16352628 |
tgaaacaaaattttccccttccaattccaataataacaaagaaa |
16352671 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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