View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20637_low_7 (Length: 272)

Name: NF20637_low_7
Description: NF20637
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20637_low_7
NF20637_low_7
[»] chr2 (2 HSPs)
chr2 (1-105)||(8019528-8019632)
chr2 (217-256)||(8019474-8019513)
[»] chr3 (9 HSPs)
chr3 (1-60)||(28183439-28183498)
chr3 (1-134)||(17746696-17746838)
chr3 (1-134)||(19048016-19048158)
chr3 (1-37)||(28081438-28081474)
chr3 (1-60)||(28147234-28147294)
chr3 (76-123)||(28001872-28001919)
chr3 (4-51)||(28482365-28482412)
chr3 (4-51)||(28511177-28511224)
chr3 (1-53)||(27974226-27974278)
[»] scaffold0257 (1 HSPs)
scaffold0257 (8-60)||(17021-17073)
[»] chr6 (1 HSPs)
chr6 (169-224)||(12217255-12217309)


Alignment Details
Target: chr2 (Bit Score: 101; Significance: 4e-50; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 8019632 - 8019528
Alignment:
Q  1 tcaattcctgcaataaatgaatgggaaataaacacatgcatatgataagaataaccaagtacaatagagatggtaaaaggttgttgagatatttgatata 100  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8019632 tcaattcctgcaataaataaatgggaaataaacacatgcatatgataagaataaccaagtacaatagagatggtaaaaggttgttgagatatttgatata 8019533  T
Q  101 ctaga 105  Q
    |||||    
T  8019532 ctaga 8019528  T

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Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 217 - 256
Target Start/End: Complemental strand, 8019513 - 8019474
Alignment:
Q  217 aggttttaactaattgcatatgattatgaaagttgttagt 256  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  8019513 aggttttaactaattgcatatgattatgaaagttgttagt 8019474  T

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Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 28183498 - 28183439
Alignment:
Q  1 tcaattcctgcaataaatgaatgggaaataaacacatgcatatgataagaataaccaagt 60  Q
    ||||||||||||||||||||||||||||||||||||||||||  ||||||||||| ||||    
T  28183498 tcaattcctgcaataaatgaatgggaaataaacacatgcataaaataagaataacaaagt 28183439  T

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Target: chr3; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 134
Target Start/End: Original strand, 17746696 - 17746838
Alignment:
Q  1 tcaattcctgcaataaatgaatgggaaataaacacatgcatatgataagaataaccaagt--------acaatagagatgg-taaaaggttgttgagata 91  Q
    ||||||||||||||||||||||| ||||||||||||   |||  ||||||||||| ||||        |||||||||||   |||||||||||  |||||    
T  17746696 tcaattcctgcaataaatgaatgagaaataaacacacatataaaataagaataacaaagtctgtaagtacaatagagatatataaaaggttgtgaagata 17746795  T
Q  92 tttgatatactagagtgtttattcaaactcacaagttctctct 134  Q
    |||||||||| |||||||| |||||||||||||  ||||||||    
T  17746796 tttgatatacgagagtgttgattcaaactcacagtttctctct 17746838  T

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Target: chr3; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 134
Target Start/End: Original strand, 19048016 - 19048158
Alignment:
Q  1 tcaattcctgcaataaatgaatgggaaataaacacatgcatatgataagaataaccaagt--------acaatagagatgg-taaaaggttgttgagata 91  Q
    ||||||||||||||||||||||| ||||||||||||   |||  ||||||||||| ||||        |||||||||||   |||||||||||  |||||    
T  19048016 tcaattcctgcaataaatgaatgagaaataaacacacatataaaataagaataacaaagtctgtaagtacaatagagatatataaaaggttgtgaagata 19048115  T
Q  92 tttgatatactagagtgtttattcaaactcacaagttctctct 134  Q
    |||||||||| |||||||| |||||||||||||  ||||||||    
T  19048116 tttgatatacgagagtgttgattcaaactcacagtttctctct 19048158  T

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Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 28081474 - 28081438
Alignment:
Q  1 tcaattcctgcaataaatgaatgggaaataaacacat 37  Q
    |||||||||||||||||||||||||||||||||||||    
T  28081474 tcaattcctgcaataaatgaatgggaaataaacacat 28081438  T

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Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 28147294 - 28147234
Alignment:
Q  1 tcaattcctgcaataaatgaatgggaaataaacac-atgcatatgataagaataaccaagt 60  Q
    |||||||||| |||||||||||||||||||||||| |||||||  ||||||||||| ||||    
T  28147294 tcaattcctgtaataaatgaatgggaaataaacacaatgcataaaataagaataacaaagt 28147234  T

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Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 76 - 123
Target Start/End: Complemental strand, 28001919 - 28001872
Alignment:
Q  76 aaaggttgttgagatatttgatatactagagtgtttattcaaactcac 123  Q
    ||||||||| ||||||||| ||||||||||||||  ||||||||||||    
T  28001919 aaaggttgtggagatatttaatatactagagtgtcgattcaaactcac 28001872  T

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Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 4 - 51
Target Start/End: Original strand, 28482365 - 28482412
Alignment:
Q  4 attcctgcaataaatgaatgggaaataaacacatgcatatgataagaa 51  Q
    |||||| |||||||||||||||||||||||||||| |||  |||||||    
T  28482365 attcctacaataaatgaatgggaaataaacacatgtataaaataagaa 28482412  T

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Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 4 - 51
Target Start/End: Original strand, 28511177 - 28511224
Alignment:
Q  4 attcctgcaataaatgaatgggaaataaacacatgcatatgataagaa 51  Q
    |||||| |||||||||||||||||||||||||||| |||  |||||||    
T  28511177 attcctacaataaatgaatgggaaataaacacatgtataaaataagaa 28511224  T

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Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 27974278 - 27974226
Alignment:
Q  1 tcaattcctgcaataaatgaatgggaaataaacacatgcatatgataagaata 53  Q
    ||||||||| || |||| ||||| ||||||||||||||||||  |||||||||    
T  27974278 tcaattcctacagtaaacgaatgagaaataaacacatgcataaaataagaata 27974226  T

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Target: scaffold0257 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0257
Description:

Target: scaffold0257; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 8 - 60
Target Start/End: Complemental strand, 17073 - 17021
Alignment:
Q  8 ctgcaataaatgaatgggaaataaacacatgcatatgataagaataaccaagt 60  Q
    ||||||||||||||||||||||||||||||| |||  ||||||||||| ||||    
T  17073 ctgcaataaatgaatgggaaataaacacatgtataaaataagaataacaaagt 17021  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 169 - 224
Target Start/End: Original strand, 12217255 - 12217309
Alignment:
Q  169 aacttgttccacaaactatccaggtagttagttttaactaactgtaataggtttta 224  Q
    ||||||||||||||  |||| || ||||||||| ||||||||||||||||||||||    
T  12217255 aacttgttccacaagttatctag-tagttagttgtaactaactgtaataggtttta 12217309  T

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