View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20637_low_8 (Length: 244)
Name: NF20637_low_8
Description: NF20637
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20637_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 213; Significance: 1e-117; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 7 - 227
Target Start/End: Original strand, 11996488 - 11996708
Alignment:
| Q |
7 |
tgacatcaatatcaatgataatgcgaatttggtcaaaggaaattgagtacaaacgtaaactaaatacaagcaagcttagaaaatttaaaaaattacaagt |
106 |
Q |
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| T |
11996488 |
tgacatcaatatcaatgataatgcgaatttggtcaaaggaaattgagtacaaacgtaaactaaatacaagcaagcttagaaaatttaaaaaattacaagt |
11996587 |
T |
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| Q |
107 |
taggctcaatcaaaactttaaaaatagatcataaatgtacttattagcttacctctatcttgcccaaaaatgatgatacattgaccactcttggtgaatc |
206 |
Q |
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| T |
11996588 |
taggctcaatcaaaactttaaaagtagatcataaatgtacttattagcttacctctatcttgcccaaaaatgatgatacattgactactcttggtgaatc |
11996687 |
T |
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| Q |
207 |
agataattgaaggaggggaag |
227 |
Q |
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| T |
11996688 |
agataattgaaggaggggaag |
11996708 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 140 - 227
Target Start/End: Original strand, 12008562 - 12008649
Alignment:
| Q |
140 |
aatgtacttattagcttacctctatcttgcccaaaaatgatgatacattgaccactcttggtgaatcagataattgaaggaggggaag |
227 |
Q |
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| T |
12008562 |
aatgtacatattagcttacctctatcttgcccaaaaatgatgatacattgactactcgtggtgaatccgataactggaggaggggaag |
12008649 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 156 - 227
Target Start/End: Original strand, 12003126 - 12003197
Alignment:
| Q |
156 |
tacctctatcttgcccaaaaatgatgatacattgaccactcttggtgaatcagataattgaaggaggggaag |
227 |
Q |
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| T |
12003126 |
tacctctatcttgcccaatcctgatgatacattgactacttttggtgaatcagataattgaaggaggggaag |
12003197 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 152 - 227
Target Start/End: Original strand, 11987921 - 11987996
Alignment:
| Q |
152 |
agcttacctctatcttgcccaaaaatgatgatacattgaccactcttggtgaatcagataattgaaggaggggaag |
227 |
Q |
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| T |
11987921 |
agcttacctctatcttgcccgctccagatgatacattgactactcttggtgaatcagatagttgaaggaggggaag |
11987996 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 178 - 227
Target Start/End: Original strand, 12013062 - 12013111
Alignment:
| Q |
178 |
gatgatacattgaccactcttggtgaatcagataattgaaggaggggaag |
227 |
Q |
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| T |
12013062 |
gatgatacattgactactcttggtgaatcagataattgaaggagaggaag |
12013111 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 224
Target Start/End: Original strand, 11973155 - 11973201
Alignment:
| Q |
178 |
gatgatacattgaccactcttggtgaatcagataattgaaggagggg |
224 |
Q |
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| T |
11973155 |
gatgatacattcacaattcttggtgaatcagataactgaaggagggg |
11973201 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 212
Target Start/End: Original strand, 11983230 - 11983290
Alignment:
| Q |
152 |
agcttacctctatcttgcccaaaaatgatgatacattgaccactcttggtgaatcagataa |
212 |
Q |
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| T |
11983230 |
agcttacctctaactttcccaaagtggatgatacattcacaattcttggtgaatcagataa |
11983290 |
T |
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