View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20638_high_11 (Length: 349)
Name: NF20638_high_11
Description: NF20638
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20638_high_11 |
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Alignment Details
Target: chr4 (Bit Score: 290; Significance: 1e-163; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 22 - 331
Target Start/End: Original strand, 29851467 - 29851776
Alignment:
| Q |
22 |
catcatcatcatagcgaggctgccccctttcagcttgatgattctttggtaagtcctcatgtaacgaatccccatcattatcatagtaaggatgtcgctt |
121 |
Q |
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| T |
29851467 |
catcatcatcatagcgaggctgccccctttcagcttgatgattctttggtaagtcctcatgtaacgaatccccatcattatcatagtgaggatgacgctt |
29851566 |
T |
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| Q |
122 |
tttagcttgaggttgctttggtaaaaccccatctagcaaattgtcttcgacatcatagtgagaacgtccccttttagcttgatgattctttggtaagtcc |
221 |
Q |
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| T |
29851567 |
tttagcttgaggttgctttggtaaaaccccatctaacaaattgtcttcgacatcatagtgagaacgtccccttttagcttgatgattctttggtaagtcc |
29851666 |
T |
|
| Q |
222 |
tcatgtagcgaatcctcgtcattatcatagtgaggatgccgctttttagcttgttgctttggcaagaccccgtctggcaaatcgtcatcatcatcatagt |
321 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29851667 |
tcatgtagcgaatcctcgtcattatcgtagtgaggatgccgctttttagcttgttgctttggcaagaccccgtctggcaaatcgtcatcatcatcatagt |
29851766 |
T |
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| Q |
322 |
gatgatgtcc |
331 |
Q |
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|| ||||||| |
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| T |
29851767 |
gaggatgtcc |
29851776 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 45 - 323
Target Start/End: Original strand, 29851346 - 29851627
Alignment:
| Q |
45 |
cccctttcagcttgatgattctttggtaagtcctcatgtaacgaatccccatcattatcatagtaaggatgtcgctttttagcttgaggttgctttggta |
144 |
Q |
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| T |
29851346 |
ccccttttagcctgatgattctttggtaagtcctcatgtagcgaatcctcatcattatcatagtgaggatgtagctttttagcttgacgttgctttggta |
29851445 |
T |
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| Q |
145 |
aaaccccatctagcaaattgtcttcgacatcatagtgagaacgtccccttttagcttgatgattctttggtaagtcctcatgtagcgaatcctcgtcatt |
244 |
Q |
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| T |
29851446 |
aaaccccatctggcagatcgtcatcatcatcatagcgaggctgccccctttcagcttgatgattctttggtaagtcctcatgtaacgaatccccatcatt |
29851545 |
T |
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| Q |
245 |
atcatagtgaggatgccgctttttagctt---gttgctttggcaagaccccgtctggcaaatcgtcatcatcatcatagtga |
323 |
Q |
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| T |
29851546 |
atcatagtgaggatgacgctttttagcttgaggttgctttggtaaaaccccatctaacaaattgtcttcgacatcatagtga |
29851627 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 172 - 320
Target Start/End: Original strand, 29851329 - 29851480
Alignment:
| Q |
172 |
catcatagtgagaacgtccccttttagcttgatgattctttggtaagtcctcatgtagcgaatcctcgtcattatcatagtgaggatgccgctttttagc |
271 |
Q |
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||||||| ||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||| |
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| T |
29851329 |
catcataaagaggacgtccccttttagcctgatgattctttggtaagtcctcatgtagcgaatcctcatcattatcatagtgaggatgtagctttttagc |
29851428 |
T |
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| Q |
272 |
tt---gttgctttggcaagaccccgtctggcaaatcgtcatcatcatcatag |
320 |
Q |
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| T |
29851429 |
ttgacgttgctttggtaaaaccccatctggcagatcgtcatcatcatcatag |
29851480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 45 - 225
Target Start/End: Original strand, 29851634 - 29851811
Alignment:
| Q |
45 |
cccctttcagcttgatgattctttggtaagtcctcatgtaacgaatccccatcattatcatagtaaggatgtcgctttttagcttgaggttgctttggta |
144 |
Q |
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| T |
29851634 |
ccccttttagcttgatgattctttggtaagtcctcatgtagcgaatcctcgtcattatcgtagtgaggatgccgctttttagcttg---ttgctttggca |
29851730 |
T |
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| Q |
145 |
aaaccccatctagcaaattgtcttcgacatcatagtgagaacgtccccttttagcttgatgattctttggtaagtcctcat |
225 |
Q |
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| T |
29851731 |
agaccccgtctggcaaatcgtcatcatcatcatagtgaggatgtccccttttagcatgatgttgctttggtaagacctcat |
29851811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 94 - 243
Target Start/End: Original strand, 29851752 - 29851898
Alignment:
| Q |
94 |
catcattatcatagtaaggatgtcgctttttagcttgaggttgctttggtaaaaccccatctagcaaattgtcttcgacatcatagtgagaacgtcccct |
193 |
Q |
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|||||| |||||||| |||||||| | ||||||| ||| ||||||||||||| ||| ||||||| | | ||| ||| |||||||||||||| ||||| |
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| T |
29851752 |
catcatcatcatagtgaggatgtccccttttagcatgatgttgctttggtaagacctcatctagagagtcgtcgtcg---tcatagtgagaacgacccct |
29851848 |
T |
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| Q |
194 |
tttagcttgatgattctttggtaagtcctcatgtagcgaatcctcgtcat |
243 |
Q |
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|||||||||| | | ||||||||| |||||| ||| |||||||| |||| |
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| T |
29851849 |
tttagcttgacgttgctttggtaaaacctcatctagtgaatcctcatcat |
29851898 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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