View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20638_high_12 (Length: 348)
Name: NF20638_high_12
Description: NF20638
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20638_high_12 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 171; Significance: 9e-92; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 171; E-Value: 9e-92
Query Start/End: Original strand, 22 - 343
Target Start/End: Original strand, 47011023 - 47011336
Alignment:
| Q |
22 |
catcatcaaatcacaatattcaataacagaattattaaacattcactaactactcnnnnnnnnnnnnntaaccatatcaaagatgagcaaatcacccatt |
121 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| ||| |||||||||||||||||| |
|
|
| T |
47011023 |
catcatcaaatcacaatattcaataacagaattattaaacattcactaactactcaaa-----------aaaaataaaaaaaatgagcaaatcacccatt |
47011111 |
T |
|
| Q |
122 |
cacctcctgaatttgtaggggtcggaaatttatacccctgaaatttgcagatacgcnnnnnnnnnnntc---cagaaactacttttgtttgattgtaagc |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| |||||||||||||||||||||||| |
|
|
| T |
47011112 |
cacctcctgaatttgtaggggtcggaaatttatacccctgaaatttgcagatatgcaaaaaaaaaaaaaaaacaggaactacttttgtttgattgtaagc |
47011211 |
T |
|
| Q |
219 |
tagtttgaaaataagtgaaataactcggagactaattttttagtaagtgactaattttccagaatataaattagatacaagttaacagaaggaccaagtt |
318 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
47011212 |
tagtttgaaaataagtgaaataactcggagactaattttgtagtaagtgactaattttccagaatataaattagatacatgttaacagaaggaccaagtt |
47011311 |
T |
|
| Q |
319 |
gctcgacataaatgtctgtggtgct |
343 |
Q |
| |
|
| |||||| ||||||| ||| |||| |
|
|
| T |
47011312 |
gttcgacaaaaatgtcagtgatgct |
47011336 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 286 - 325
Target Start/End: Original strand, 24133681 - 24133720
Alignment:
| Q |
286 |
aaattagatacaagttaacagaaggaccaagttgctcgac |
325 |
Q |
| |
|
|||||||||||||||||| ||||||||||| ||||||||| |
|
|
| T |
24133681 |
aaattagatacaagttaatagaaggaccaatttgctcgac |
24133720 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000008; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 285 - 329
Target Start/End: Original strand, 41688549 - 41688593
Alignment:
| Q |
285 |
taaattagatacaagttaacagaaggaccaagttgctcgacataa |
329 |
Q |
| |
|
||||||||||||||||||| ||||| ||||||||||||||||||| |
|
|
| T |
41688549 |
taaattagatacaagttaatagaagaaccaagttgctcgacataa |
41688593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 284 - 325
Target Start/End: Complemental strand, 44008431 - 44008390
Alignment:
| Q |
284 |
ataaattagatacaagttaacagaaggaccaagttgctcgac |
325 |
Q |
| |
|
||||| ||||| ||||||||||||| |||||||||||||||| |
|
|
| T |
44008431 |
ataaactagattcaagttaacagaaagaccaagttgctcgac |
44008390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 285 - 329
Target Start/End: Original strand, 54064674 - 54064718
Alignment:
| Q |
285 |
taaattagatacaagttaacagaaggaccaagttgctcgacataa |
329 |
Q |
| |
|
|||||||||||||||||| |||||||||||| ||||| |||||| |
|
|
| T |
54064674 |
taaattagatacaagttattagaaggaccaagctgctccacataa |
54064718 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 285 - 322
Target Start/End: Complemental strand, 3437716 - 3437679
Alignment:
| Q |
285 |
taaattagatacaagttaacagaaggaccaagttgctc |
322 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||| |
|
|
| T |
3437716 |
taaattagatacaagttaacagaaaaaccaagttgctc |
3437679 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University