View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20638_high_13 (Length: 347)
Name: NF20638_high_13
Description: NF20638
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20638_high_13 |
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Alignment Details
Target: chr1 (Bit Score: 132; Significance: 2e-68; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 193 - 324
Target Start/End: Complemental strand, 50459677 - 50459546
Alignment:
| Q |
193 |
ggtattaagcatgttcactcaccatgattgaaagtttctgcaattgaggaaaagtttgaaggatgttgagaatccacaaaagatcaaactccatttcact |
292 |
Q |
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| T |
50459677 |
ggtattaagcatgttcactcaccatgattgaaagtttctgcaattgaggaaaagtttgaaggatgttgagaatccacaaaagatcaaactccatttcact |
50459578 |
T |
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| Q |
293 |
taagaagtcccagtgcgaccactgtatgatga |
324 |
Q |
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| T |
50459577 |
taagaagtcccagtgcgaccactgtatgatga |
50459546 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 30 - 147
Target Start/End: Complemental strand, 50459840 - 50459723
Alignment:
| Q |
30 |
gaaagtgcattaaactcaattggtgttagcataataggatgttttaaacatatatgatcttttttcatgactcaccagatcaaaagaataacttaattta |
129 |
Q |
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| T |
50459840 |
gaaagtgcattaaactcaattggtgttagcataataggatgttttaaacatatatgatcttatttcatgactcaccagatcaaaagaataacttaattta |
50459741 |
T |
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| Q |
130 |
tgaatgaagccatggctc |
147 |
Q |
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| T |
50459740 |
tgaatgaagccatggctc |
50459723 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 46; Significance: 3e-17; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 202 - 275
Target Start/End: Original strand, 47051333 - 47051406
Alignment:
| Q |
202 |
catgttcactcaccatgattgaaagtttctgcaattgaggaaaagtttgaaggatgttgagaatccacaaaaga |
275 |
Q |
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| T |
47051333 |
catgttcactcaccatgattgaaagtttctgcaaaagaggagaagcttgaagcatgtttaaaatccacaaaaga |
47051406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 203 - 275
Target Start/End: Complemental strand, 47929131 - 47929059
Alignment:
| Q |
203 |
atgttcactcaccatgattgaaagtttctgcaattgaggaaaagtttgaaggatgttgagaatccacaaaaga |
275 |
Q |
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| T |
47929131 |
atgttcactcaccatgacagagagtttctgcagaagaggagaagcttgaaggatgtttaaaatccacaaaaga |
47929059 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 203 - 285
Target Start/End: Original strand, 48107506 - 48107588
Alignment:
| Q |
203 |
atgttcactcaccatgattgaaagtttctgcaattgaggaaaagtttgaaggatgttgagaatccacaaaagatcaaactcca |
285 |
Q |
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|||||||||||||||| ||||||||||||||| |||| || |||||||||||| | |||||| ||| ||||| |||||| |
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| T |
48107506 |
atgttcactcaccatggctgaaagtttctgcaaaaaaggacaaacttgaaggatgtttaaaatccataaaggatcatactcca |
48107588 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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