View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20638_high_23 (Length: 309)
Name: NF20638_high_23
Description: NF20638
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20638_high_23 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 272; Significance: 1e-152; HSPs: 12)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 12 - 287
Target Start/End: Complemental strand, 30025488 - 30025213
Alignment:
| Q |
12 |
atgagctttggtgcgttcaacataccatttgagaaagtttccatcatgggacagtttattacaaataacgtcctcaatagtggaaatttgaagtcatgtc |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30025488 |
atgagctttggtgcgttcaacataccatttgagaaagtttccatcatgggacagtttattacaaataacgtcctcaatagtggaaatttgaagtcatgtc |
30025389 |
T |
|
| Q |
112 |
ttcctttacaaaaacttcttagccttggtaagttattcaatcgcagataccccaatttcataaatgataactctgaagcatcattctcatcgtcacttgc |
211 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
30025388 |
ttcctttacaaaaacttcttagccttggtaagttattcaatcgcagataccccaatttcataaatgataactccgaagcatcattctcatcgtcacttgc |
30025289 |
T |
|
| Q |
212 |
aacgattacttctatcttttcacaaaaatctatgcataattttcgaagttttggtaaattggtaattgttgatgat |
287 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30025288 |
aacgattacttctatcttttcacaaaaatctatgcataattttcgaagttttggtaaattggtaattgttgatgat |
30025213 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 12 - 287
Target Start/End: Original strand, 30116634 - 30116909
Alignment:
| Q |
12 |
atgagctttggtgcgttcaacataccatttgagaaagtttccatcatgggacagtttattacaaataacgtcctcaatagtggaaatttgaagtcatgtc |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30116634 |
atgagctttggtgcgttcaacataccatttgagaaagtttccatcatgggacagtttattacaaataacgtcctcaatagtggaaatttgaagtcatgtc |
30116733 |
T |
|
| Q |
112 |
ttcctttacaaaaacttcttagccttggtaagttattcaatcgcagataccccaatttcataaatgataactctgaagcatcattctcatcgtcacttgc |
211 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
30116734 |
ttcctttacaaaaacttcttagccttggtaagttattcaatcgcagataccccaatttcataaatgataactccgaagcatcattctcatcgtcacttgc |
30116833 |
T |
|
| Q |
212 |
aacgattacttctatcttttcacaaaaatctatgcataattttcgaagttttggtaaattggtaattgttgatgat |
287 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30116834 |
aacgattacttctatcttttcacaaaaatctatgcataattttcgaagttttggtaaattggtaattgttgatgat |
30116909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 12 - 287
Target Start/End: Original strand, 30131391 - 30131666
Alignment:
| Q |
12 |
atgagctttggtgcgttcaacataccatttgagaaagtttccatcatgggacagtttattacaaataacgtcctcaatagtggaaatttgaagtcatgtc |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30131391 |
atgagctttggtgcgttcaacataccatttgagaaagtttccatcatgggacagtttattacaaataacgtcctcaatagtggaaatttgaagtcatgtc |
30131490 |
T |
|
| Q |
112 |
ttcctttacaaaaacttcttagccttggtaagttattcaatcgcagataccccaatttcataaatgataactctgaagcatcattctcatcgtcacttgc |
211 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
30131491 |
ttcctttacaaaaacttcttagccttggtaagttattcaatcgcagataccccaatttcataaatgataactccgaagcatcattctcatcgtcacttgc |
30131590 |
T |
|
| Q |
212 |
aacgattacttctatcttttcacaaaaatctatgcataattttcgaagttttggtaaattggtaattgttgatgat |
287 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30131591 |
aacgattacttctatcttttcacaaaaatctatgcataattttcgaagttttggtaaattggtaattgttgatgat |
30131666 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 12 - 287
Target Start/End: Original strand, 30035209 - 30035484
Alignment:
| Q |
12 |
atgagctttggtgcgttcaacataccatttgagaaagtttccatcatgggacagtttattacaaataacgtcctcaatagtggaaatttgaagtcatgtc |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30035209 |
atgagctttggtgcgttcaacataccatttgagaaagtttccatcatgggacagtttattacaaataacgtcctcaatagtggaaatttgaagtcatgtc |
30035308 |
T |
|
| Q |
112 |
ttcctttacaaaaacttcttagccttggtaagttattcaatcgcagataccccaatttcataaatgataactctgaagcatcattctcatcgtcacttgc |
211 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |
|
|
| T |
30035309 |
ttcctttacaaaaacttcttagccttggtaagttattcaatcgcagataccccaatttcataaatgataactccgaagcatcattctcatcatcacttgc |
30035408 |
T |
|
| Q |
212 |
aacgattacttctatcttttcacaaaaatctatgcataattttcgaagttttggtaaattggtaattgttgatgat |
287 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30035409 |
aacgattacttctatcttttcacaaaaatctatgcataattttcgaagttttggtaaattggtaattgttgatgat |
30035484 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 12 - 287
Target Start/End: Original strand, 30229347 - 30229622
Alignment:
| Q |
12 |
atgagctttggtgcgttcaacataccatttgagaaagtttccatcatgggacagtttattacaaataacgtcctcaatagtggaaatttgaagtcatgtc |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30229347 |
atgagctttggtgcgttcaacataccatttgagaaagtttccatcatgggacagtttattacaaataacgtcctcaatagtggaaatttgaagtcatgtc |
30229446 |
T |
|
| Q |
112 |
ttcctttacaaaaacttcttagccttggtaagttattcaatcgcagataccccaatttcataaatgataactctgaagcatcattctcatcgtcacttgc |
211 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |
|
|
| T |
30229447 |
ttcctttacaaaaacttcttagccttggtaagttattcaatcgcagataccccaatttcataaatgataactccgaagcatcattctcatcatcacttgc |
30229546 |
T |
|
| Q |
212 |
aacgattacttctatcttttcacaaaaatctatgcataattttcgaagttttggtaaattggtaattgttgatgat |
287 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30229547 |
aacgattacttctatcttttcacaaaaatctatgcataattttcgaagttttggtaaattggtaattgttgatgat |
30229622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 14 - 287
Target Start/End: Original strand, 30236642 - 30236915
Alignment:
| Q |
14 |
gagctttggtgcgttcaacataccatttgagaaagtttccatcatgggacagtttattacaaataacgtcctcaatagtggaaatttgaagtcatgtctt |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
30236642 |
gagctttggtgcgttcaacataccatttgagaaagtttccatcatgggacagtttattacaaataacgtcctcaatagtggaaatttgaagtcaagtctt |
30236741 |
T |
|
| Q |
114 |
cctttacaaaaacttcttagccttggtaagttattcaatcgcagataccccaatttcataaatgataactctgaagcatcattctcatcgtcacttgcaa |
213 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||| |
|
|
| T |
30236742 |
cctttacaaaaacttcttagccttggtaagttattcaatcgcagataccccaatttcataaatgataactcagaagcatcattctcatcatcacttgcaa |
30236841 |
T |
|
| Q |
214 |
cgattacttctatcttttcacaaaaatctatgcataattttcgaagttttggtaaattggtaattgttgatgat |
287 |
Q |
| |
|
|||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30236842 |
cgattacttctatcttttcacaaaaaactatacataattttcgaagttttggtaaattggtaattgttgatgat |
30236915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 12 - 247
Target Start/End: Complemental strand, 30070608 - 30070373
Alignment:
| Q |
12 |
atgagctttggtgcgttcaacataccatttgagaaagtttccatcatgggacagtttattacaaataacgtcctcaatagtggaaatttgaagtcatgtc |
111 |
Q |
| |
|
|||||||||||||||||||||| |||| ||||||||||||||||| |||||| | || |||||||||| || || | |||||||||||||| |||||| |
|
|
| T |
30070608 |
atgagctttggtgcgttcaacactccatgtgagaaagtttccatcacgggacaatctactacaaataacttctgcagttgtggaaatttgaagccatgtc |
30070509 |
T |
|
| Q |
112 |
ttcctttacaaaaacttcttagccttggtaagttattcaatcgcagataccccaatttcataaatgataactctgaagcatcattctcatcgtcacttgc |
211 |
Q |
| |
|
| || || ||||||||||||||||||||||||||| |||||| ||||||| ||| ||||||||| || ||| ||||||||||||||||| |||||||| |
|
|
| T |
30070508 |
tacccttgcaaaaacttcttagccttggtaagttactcaatctcagatactccagtttcataaaatctagctcagaagcatcattctcatcatcacttgc |
30070409 |
T |
|
| Q |
212 |
aacgattacttctatcttttcacaaaaatctatgca |
247 |
Q |
| |
|
||| ||| ||||||| ||||||||| ||||||||| |
|
|
| T |
30070408 |
aactatttcttctatattttcacaatcatctatgca |
30070373 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 15 - 252
Target Start/End: Complemental strand, 30282077 - 30281840
Alignment:
| Q |
15 |
agctttggtgcgttcaacataccatttgagaaagtttccatcatgggacagtttattacaaataacgtcctcaatagtggaaatttgaagtcatgtcttc |
114 |
Q |
| |
|
||||| ||||| ||||||| |||| |||||||||||||||||||||||| ||||||||||||||| || || |||||||||||||||| ||||| ||| |
|
|
| T |
30282077 |
agcttaggtgcattcaacactccatgtgagaaagtttccatcatgggacaatttattacaaataacttcggcagtagtggaaatttgaagccatgttttc |
30281978 |
T |
|
| Q |
115 |
ctttacaaaaacttcttagccttggtaagttattcaatcgcagataccccaatttcataaatgataactctgaagcatcattctcatcgtcacttgcaac |
214 |
Q |
| |
|
| || ||||||||||||||| ||||||| ||| ||| | ||| | || ||||||||||||| || ||| ||||||||||||||||| |||||||| || |
|
|
| T |
30281977 |
ccttgcaaaaacttcttagcgttggtaaattactcagttgcaaaaactccaatttcataaaaattagctcagaagcatcattctcatcatcacttgctac |
30281878 |
T |
|
| Q |
215 |
gattacttctatcttttcacaaaaatctatgcataatt |
252 |
Q |
| |
|
||| |||| |||||| ||||| ||| |||| |||||| |
|
|
| T |
30281877 |
tatttcttcaatctttccacaacaatgtatgtataatt |
30281840 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 13 - 252
Target Start/End: Original strand, 30181763 - 30182002
Alignment:
| Q |
13 |
tgagctttggtgcgttcaacataccatttgagaaagtttccatcatgggacagtttattacaaataacgtcctcaatagtggaaatttgaagtcatgtct |
112 |
Q |
| |
|
||||| ||||||||||||||| |||| ||||||||||||||||| |||||| | || |||||||||| |||||| ||||||||||||||| ||||||| |
|
|
| T |
30181763 |
tgagccttggtgcgttcaacactccatgtgagaaagtttccatcacgggacaatctactacaaataacatcctcagcagtggaaatttgaagccatgtct |
30181862 |
T |
|
| Q |
113 |
tcctttacaaaaacttcttagccttggtaagttattcaatcgcagataccccaatttcataaatgataactctgaagcatcattctcatcgtcacttgca |
212 |
Q |
| |
|
||| || ||||||||||||||||||||||| ||| ||| | ||| | || ||||||||||||| || || |||| |||||||||||| |||||||| |
|
|
| T |
30181863 |
tcccttgcaaaaacttcttagccttggtaaattactcagttgcaaaaactccaatttcataaaaattaggtcagaagtatcattctcatcatcacttgct |
30181962 |
T |
|
| Q |
213 |
acgattacttctatcttttcacaaaaatctatgcataatt |
252 |
Q |
| |
|
|| ||| |||| |||||| ||||| ||| |||| |||||| |
|
|
| T |
30181963 |
actatttcttcaatctttccacaacaatgtatgtataatt |
30182002 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 12 - 269
Target Start/End: Complemental strand, 30793126 - 30792869
Alignment:
| Q |
12 |
atgagctttggtgcgttcaacataccatttgagaaagtttccatcatgggacagtttattacaaataacgtcctcaatagtggaaatttgaagtcatgtc |
111 |
Q |
| |
|
||||||||||||||||||||| |||| |||||||||||||||||| ||||| | |||||||||||| || || |||||||||||||| |||||| |
|
|
| T |
30793126 |
atgagctttggtgcgttcaacgctccatgtgagaaagtttccatcattggacaatctattacaaataagttctgcagctgtggaaatttgaagccatgtc |
30793027 |
T |
|
| Q |
112 |
ttcctttacaaaaacttcttagccttggtaagttattcaatcgcagataccccaatttcataaatgataactctgaagcatcattctcatcgtcacttgc |
211 |
Q |
| |
|
|||| | ||||||||||||||| ||||||||||| |||| |||||| | ||||||||||||| || ||| |||||||||| || || ||| |||| |
|
|
| T |
30793026 |
ttcccatgcaaaaacttcttagcattggtaagttactcaactgcagatgctccaatttcataaaatttatctcaaaagcatcattttcgtcatcagttgc |
30792927 |
T |
|
| Q |
212 |
aacgattacttctatcttttcacaaaaatctatgcataattttcgaagttttggtaaa |
269 |
Q |
| |
|
||| ||| ||||||||||||||||| || ||| |||||||||| ||||||| ||||| |
|
|
| T |
30792926 |
aactatttcttctatcttttcacaattatatatccataattttctaagtttttgtaaa |
30792869 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #11
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 13 - 263
Target Start/End: Complemental strand, 30177378 - 30177128
Alignment:
| Q |
13 |
tgagctttggtgcgttcaacataccatttgagaaagtttccatcatgggacagtttattacaaataacgtcctcaatagtggaaatttgaagtcatgtct |
112 |
Q |
| |
|
||||||||||||| ||||||| |||| |||||||||||||||||||||||| | || |||||||||| || | | ||| |||||||||| | |||| | |
|
|
| T |
30177378 |
tgagctttggtgcattcaacactccatgtgagaaagtttccatcatgggacaatctactacaaataacttctttagtagcggaaatttgaggctatgttt |
30177279 |
T |
|
| Q |
113 |
tcctttacaaaaacttcttagccttggtaagttattcaatcgcagataccccaatttcataaatgataactctgaagcatcattctcatcgtcacttgca |
212 |
Q |
| |
|
||| || ||||||||||| ||||||||||||||| ||| | || |||| |||||||||||| | || ||| ||||||||| | ||||| ||||||||| |
|
|
| T |
30177278 |
tcccttgcaaaaacttctaagccttggtaagttaatcagtttcaaatacttcaatttcataaaagctagctcagaagcatcactttcatcatcacttgca |
30177179 |
T |
|
| Q |
213 |
acgattacttctatcttttcacaaaaatctatgcataattttcgaagtttt |
263 |
Q |
| |
|
| ||| |||||||||||||||| || || |||||||||||||||||| |
|
|
| T |
30177178 |
attatttcttctatcttttcacagtcatgaatacataattttcgaagtttt |
30177128 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #12
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 13 - 236
Target Start/End: Complemental strand, 30254505 - 30254282
Alignment:
| Q |
13 |
tgagctttggtgcgttcaacataccatttgagaaagtttccatcatgggacagtttattacaaataacgtcctcaatagtggaaatttgaagtcatgtct |
112 |
Q |
| |
|
|||||||||||||||| |||| || | |||||||||||||||||| ||||| | || ||| |||||| || || || |||||||| | | ||||||| |
|
|
| T |
30254505 |
tgagctttggtgcgtttaacactccgtgtgagaaagtttccatcattggacaatctactacgaataacttctgcagaagcggaaattttaggccatgtct |
30254406 |
T |
|
| Q |
113 |
tcctttacaaaaacttcttagccttggtaagttattcaatcgcagataccccaatttcataaatgataactctgaagcatcattctcatcgtcacttgca |
212 |
Q |
| |
|
||| || ||||||||||||||||||||||| ||| ||| |||| |||| ||||||||||||| || ||| ||| ||||||||||||| |||||||| |
|
|
| T |
30254405 |
tcccttgcaaaaacttcttagccttggtaaattactcagacgcaaatactccaatttcataaaacttagctcagaatcatcattctcatcatcacttgct |
30254306 |
T |
|
| Q |
213 |
acgattacttctatcttttcacaa |
236 |
Q |
| |
|
|| ||| || |||||||||||||| |
|
|
| T |
30254305 |
actatttctcctatcttttcacaa |
30254282 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 15 - 80
Target Start/End: Original strand, 12629115 - 12629182
Alignment:
| Q |
15 |
agctttggtgcgttcaacataccatttgagaaagtttccatcatgggacagttta--ttacaaataac |
80 |
Q |
| |
|
||||||||||| ||||||| |||| ||||||||||||||||||||||| |||| ||||||||||| |
|
|
| T |
12629115 |
agctttggtgcattcaacactccatgcgagaaagtttccatcatgggacaatttatgttacaaataac |
12629182 |
T |
|
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