View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20638_high_27 (Length: 300)

Name: NF20638_high_27
Description: NF20638
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20638_high_27
NF20638_high_27
[»] scaffold0090 (1 HSPs)
scaffold0090 (13-216)||(18033-18236)
[»] chr3 (26 HSPs)
chr3 (27-216)||(24192820-24193009)
chr3 (25-206)||(9534203-9534382)
chr3 (25-216)||(14762758-14762948)
chr3 (27-216)||(20247791-20247979)
chr3 (24-206)||(23370505-23370686)
chr3 (27-216)||(38310802-38310990)
chr3 (14-206)||(16801457-16801647)
chr3 (14-108)||(41455087-41455178)
chr3 (24-139)||(24933828-24933941)
chr3 (27-206)||(55499104-55499283)
chr3 (25-86)||(18929239-18929300)
chr3 (25-89)||(17240513-17240577)
chr3 (24-79)||(13302240-13302295)
chr3 (24-79)||(13323787-13323842)
chr3 (24-79)||(12033444-12033499)
chr3 (24-79)||(13312896-13312951)
chr3 (24-79)||(17131732-17131787)
chr3 (24-79)||(51301589-51301644)
chr3 (24-79)||(14865846-14865901)
chr3 (24-59)||(23392819-23392854)
chr3 (27-81)||(16801027-16801081)
chr3 (24-77)||(10389443-10389496)
chr3 (24-77)||(10414532-10414585)
chr3 (24-77)||(10421202-10421255)
chr3 (24-60)||(2247649-2247685)
chr3 (19-75)||(10833303-10833359)
[»] scaffold0025 (1 HSPs)
scaffold0025 (27-216)||(14398-14587)
[»] scaffold0026 (2 HSPs)
scaffold0026 (14-216)||(11840-12041)
scaffold0026 (24-206)||(111561-111741)
[»] chr7 (28 HSPs)
chr7 (21-213)||(14422852-14423043)
chr7 (20-216)||(18873225-18873420)
chr7 (25-216)||(15168040-15168230)
chr7 (14-216)||(12709833-12710033)
chr7 (14-216)||(13122904-13123104)
chr7 (29-216)||(10895795-10895981)
chr7 (25-206)||(16009452-16009631)
chr7 (14-216)||(13743574-13743774)
chr7 (14-139)||(12590633-12590756)
chr7 (14-139)||(13007374-13007497)
chr7 (27-135)||(16677239-16677348)
chr7 (27-135)||(17651475-17651584)
chr7 (14-80)||(21230949-21231015)
chr7 (25-80)||(11382871-11382926)
chr7 (25-80)||(11389348-11389403)
chr7 (14-80)||(20311039-20311107)
chr7 (25-88)||(13679485-13679548)
chr7 (24-79)||(2971254-2971309)
chr7 (24-79)||(20906461-20906516)
chr7 (25-79)||(11311059-11311113)
chr7 (19-60)||(831628-831669)
chr7 (19-60)||(1196808-1196849)
chr7 (19-60)||(34958578-34958619)
chr7 (25-81)||(46625961-46626017)
chr7 (13-80)||(148619-148686)
chr7 (24-79)||(29181109-29181164)
chr7 (24-77)||(31155396-31155449)
chr7 (24-76)||(16091078-16091130)
[»] chr5 (15 HSPs)
chr5 (13-206)||(38144525-38144716)
chr5 (20-216)||(22751006-22751201)
chr5 (25-206)||(28370055-28370234)
chr5 (25-206)||(19512261-19512441)
chr5 (20-139)||(23528573-23528690)
chr5 (25-89)||(18407944-18408008)
chr5 (14-80)||(22438736-22438803)
chr5 (25-89)||(23111200-23111264)
chr5 (24-79)||(19236900-19236955)
chr5 (13-80)||(42961566-42961633)
chr5 (24-77)||(22461158-22461211)
chr5 (24-77)||(22467782-22467835)
chr5 (24-79)||(20781744-20781799)
chr5 (24-53)||(17021913-17021942)
chr5 (13-78)||(34830086-34830150)
[»] scaffold0029 (1 HSPs)
scaffold0029 (14-216)||(111746-111948)
[»] chr1 (16 HSPs)
chr1 (25-206)||(20437024-20437204)
chr1 (14-139)||(41111977-41112100)
chr1 (25-89)||(32651563-32651627)
chr1 (25-89)||(18712790-18712854)
chr1 (25-80)||(19663517-19663572)
chr1 (25-81)||(20805320-20805376)
chr1 (25-80)||(11158093-11158148)
chr1 (27-81)||(10811785-10811839)
chr1 (24-79)||(20851132-20851187)
chr1 (24-79)||(20857759-20857814)
chr1 (24-79)||(21706276-21706331)
chr1 (24-79)||(21710818-21710873)
chr1 (25-55)||(24476350-24476380)
chr1 (25-55)||(25091418-25091448)
chr1 (26-59)||(18271338-18271371)
chr1 (26-59)||(18275992-18276025)
[»] chr6 (31 HSPs)
chr6 (14-206)||(10986170-10986361)
chr6 (25-206)||(23839073-23839253)
chr6 (25-213)||(4477725-4477912)
chr6 (14-213)||(18800305-18800503)
chr6 (25-216)||(23057803-23057993)
chr6 (14-216)||(29614136-29614337)
chr6 (14-159)||(930085-930229)
chr6 (14-139)||(12168305-12168428)
chr6 (14-139)||(19287214-19287337)
chr6 (14-139)||(19785859-19785982)
chr6 (14-139)||(19878398-19878521)
chr6 (14-139)||(19884174-19884297)
chr6 (24-109)||(34639986-34640069)
chr6 (24-89)||(34646660-34646725)
chr6 (27-216)||(21565214-21565402)
chr6 (14-80)||(24512833-24512899)
chr6 (24-89)||(25469704-25469767)
chr6 (25-77)||(9187498-9187550)
chr6 (25-81)||(25348486-25348542)
chr6 (27-81)||(25598643-25598697)
chr6 (25-81)||(25397172-25397228)
chr6 (24-89)||(31252413-31252478)
chr6 (25-81)||(19471335-19471391)
chr6 (27-81)||(2286769-2286823)
chr6 (25-59)||(18659450-18659484)
chr6 (25-59)||(24441673-24441707)
chr6 (24-77)||(11288668-11288721)
chr6 (24-77)||(15458492-15458545)
chr6 (24-77)||(15465087-15465140)
chr6 (24-52)||(28288509-28288537)
chr6 (19-59)||(29415551-29415591)
[»] chr2 (17 HSPs)
chr2 (14-194)||(26583715-26583892)
chr2 (25-206)||(6483593-6483772)
chr2 (25-206)||(6487060-6487239)
chr2 (25-213)||(19661454-19661640)
chr2 (27-206)||(23878883-23879060)
chr2 (24-139)||(5706023-5706137)
chr2 (27-216)||(23089057-23089245)
chr2 (25-206)||(23101463-23101643)
chr2 (25-89)||(23265133-23265197)
chr2 (25-89)||(23280201-23280265)
chr2 (25-86)||(21908353-21908414)
chr2 (25-81)||(24661576-24661632)
chr2 (24-79)||(10577-10632)
chr2 (24-79)||(25180929-25180984)
chr2 (15-124)||(26885139-26885246)
chr2 (14-77)||(23168288-23168351)
chr2 (14-77)||(23579545-23579608)
[»] scaffold0247 (1 HSPs)
scaffold0247 (14-201)||(11221-11407)
[»] scaffold0553 (1 HSPs)
scaffold0553 (24-206)||(10195-10376)
[»] scaffold0544 (1 HSPs)
scaffold0544 (24-206)||(1525-1706)
[»] chr8 (15 HSPs)
chr8 (24-206)||(44477498-44477678)
chr8 (24-206)||(44492656-44492836)
chr8 (14-215)||(23866481-23866680)
chr8 (27-206)||(8727735-8727913)
chr8 (14-139)||(17054533-17054656)
chr8 (25-89)||(23482053-23482117)
chr8 (25-81)||(18614271-18614327)
chr8 (13-206)||(27940840-27941034)
chr8 (14-80)||(14056553-14056619)
chr8 (25-81)||(39364919-39364975)
chr8 (14-80)||(25111976-25112042)
chr8 (25-79)||(29643386-29643440)
chr8 (24-79)||(24320670-24320725)
chr8 (25-81)||(21931696-21931752)
chr8 (11-51)||(23646710-23646750)
[»] scaffold1773 (1 HSPs)
scaffold1773 (17-216)||(1044-1240)
[»] scaffold0924 (1 HSPs)
scaffold0924 (14-165)||(740-892)
[»] scaffold0006 (1 HSPs)
scaffold0006 (17-216)||(50045-50241)
[»] scaffold0058 (1 HSPs)
scaffold0058 (14-166)||(206-356)
[»] chr4 (16 HSPs)
chr4 (14-216)||(8045822-8046022)
chr4 (14-216)||(11847972-11848179)
chr4 (24-139)||(53483646-53483760)
chr4 (14-80)||(15408139-15408205)
chr4 (25-81)||(8834895-8834951)
chr4 (25-81)||(13888641-13888697)
chr4 (27-79)||(14486661-14486713)
chr4 (25-81)||(15245215-15245271)
chr4 (30-81)||(22724691-22724742)
chr4 (19-60)||(15747551-15747592)
chr4 (25-81)||(15308120-15308176)
chr4 (24-79)||(16146830-16146885)
chr4 (24-79)||(27906266-27906321)
chr4 (25-55)||(15069781-15069811)
chr4 (25-55)||(15076381-15076411)
chr4 (24-81)||(14912081-14912138)
[»] scaffold0117 (2 HSPs)
scaffold0117 (14-216)||(1887-2087)
scaffold0117 (14-216)||(8564-8764)
[»] scaffold0154 (1 HSPs)
scaffold0154 (14-194)||(30743-30923)
[»] scaffold0796 (2 HSPs)
scaffold0796 (19-139)||(1727-1845)
scaffold0796 (19-139)||(5750-5868)
[»] scaffold0456 (4 HSPs)
scaffold0456 (20-91)||(920-991)
scaffold0456 (20-91)||(8065-8136)
scaffold0456 (171-216)||(854-899)
scaffold0456 (171-216)||(7999-8044)
[»] scaffold0476 (1 HSPs)
scaffold0476 (27-216)||(3295-3484)
[»] scaffold0129 (1 HSPs)
scaffold0129 (18-137)||(45268-45386)
[»] scaffold0077 (1 HSPs)
scaffold0077 (27-206)||(3624-3802)
[»] scaffold0107 (1 HSPs)
scaffold0107 (14-80)||(40521-40587)
[»] scaffold0222 (1 HSPs)
scaffold0222 (25-89)||(16811-16875)
[»] scaffold0004 (2 HSPs)
scaffold0004 (25-89)||(116887-116951)
scaffold0004 (26-59)||(60441-60474)
[»] scaffold0310 (1 HSPs)
scaffold0310 (14-80)||(17643-17710)
[»] scaffold0019 (1 HSPs)
scaffold0019 (14-80)||(135473-135539)
[»] scaffold0461 (1 HSPs)
scaffold0461 (25-89)||(8-72)
[»] scaffold0235 (1 HSPs)
scaffold0235 (14-78)||(22582-22646)
[»] scaffold0146 (1 HSPs)
scaffold0146 (25-89)||(13623-13687)
[»] scaffold0020 (1 HSPs)
scaffold0020 (25-89)||(101928-101992)
[»] scaffold0124 (2 HSPs)
scaffold0124 (25-80)||(34276-34331)
scaffold0124 (24-81)||(35438-35495)
[»] scaffold0815 (1 HSPs)
scaffold0815 (14-76)||(1453-1515)
[»] scaffold0138 (1 HSPs)
scaffold0138 (25-81)||(12296-12352)
[»] scaffold2054 (1 HSPs)
scaffold2054 (14-77)||(717-780)
[»] scaffold0317 (1 HSPs)
scaffold0317 (25-88)||(1378-1441)
[»] scaffold0139 (1 HSPs)
scaffold0139 (25-80)||(14997-15052)
[»] scaffold0790 (1 HSPs)
scaffold0790 (11-53)||(5480-5522)
[»] scaffold0096 (1 HSPs)
scaffold0096 (21-81)||(39503-39563)
[»] scaffold0001 (1 HSPs)
scaffold0001 (15-79)||(493019-493082)
[»] scaffold0348 (1 HSPs)
scaffold0348 (24-79)||(9336-9391)
[»] scaffold0127 (1 HSPs)
scaffold0127 (24-79)||(10239-10294)
[»] scaffold0023 (1 HSPs)
scaffold0023 (24-79)||(135438-135493)
[»] scaffold1318 (1 HSPs)
scaffold1318 (25-79)||(1913-1967)
[»] scaffold0609 (1 HSPs)
scaffold0609 (24-89)||(5857-5922)
[»] scaffold0261 (1 HSPs)
scaffold0261 (14-79)||(23559-23624)
[»] scaffold0335 (1 HSPs)
scaffold0335 (25-81)||(2628-2684)
[»] scaffold0053 (1 HSPs)
scaffold0053 (24-79)||(79490-79545)
[»] scaffold0481 (1 HSPs)
scaffold0481 (26-71)||(676-721)
[»] scaffold0249 (1 HSPs)
scaffold0249 (24-77)||(13894-13947)
[»] scaffold0600 (1 HSPs)
scaffold0600 (25-81)||(732-788)
[»] scaffold0180 (1 HSPs)
scaffold0180 (25-74)||(11630-11681)
[»] scaffold0034 (1 HSPs)
scaffold0034 (27-79)||(73285-73337)
[»] scaffold0031 (2 HSPs)
scaffold0031 (25-81)||(121902-121958)
scaffold0031 (25-81)||(132778-132834)
[»] scaffold0028 (1 HSPs)
scaffold0028 (25-77)||(69749-69801)
[»] scaffold0003 (2 HSPs)
scaffold0003 (11-39)||(80293-80321)
scaffold0003 (11-39)||(100015-100043)


Alignment Details
Target: scaffold0090 (Bit Score: 165; Significance: 3e-88; HSPs: 1)
Name: scaffold0090
Description:

Target: scaffold0090; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 13 - 216
Target Start/End: Complemental strand, 18236 - 18033
Alignment:
Q  13 attctgcaaaactaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattgcaatagcttttggaaaataaatt 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||  ||||||| ||||||||||||    
T  18236 attctgcaaaactaaggtaagggtgagactatctctcaataatcataatctataatttttgaaaattgacctaattgct-tagctttaggaaaataaatt 18138  T
Q  113 gagggttagggttga-tgatgattctgacgggaaatggtaatggtcatgttaattctgtttgtaatgtgatgtccagaatgaaaacttaacctatgttgt 211  Q
    |||||||| |||| | |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18137 gagggttaaggtttaatgatgattctaacgggaaatggtaatggtcatgttaattctgtttgtaatgtgatgtccagaatgaaaacttaacctatgttgt 18038  T
Q  212 tgctg 216  Q
    |||||    
T  18037 tgctg 18033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 132; Significance: 1e-68; HSPs: 26)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 27 - 216
Target Start/End: Complemental strand, 24193009 - 24192820
Alignment:
Q  27 aggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattgcaatagcttttggaaaataaattgagggttaggg-tt 125  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| |||||||||||||||||| ||    
T  24193009 aggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattgc-atagtttttggaagataaattgagggttagggttt 24192911  T
Q  126 gatgatgattctgacgggaaat-ggtaatggtcatgttaattctgtttgtaatgtgatgtccagaatgaaaacttaacctatgttgttgctg 216  Q
    |||||||||||||| ||||||| ||||||| |||||||||||||| |||||||||||||| |||||||||||||||| ||||| ||||||||    
T  24192910 gatgatgattctgaagggaaatgggtaatgatcatgttaattctg-ttgtaatgtgatgttcagaatgaaaacttaatctatgctgttgctg 24192820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 25 - 206
Target Start/End: Complemental strand, 9534382 - 9534203
Alignment:
Q  25 taaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattgcaatagcttttggaaaataaattgagggttaggg- 123  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||     
T  9534382 taaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattgc-atag-ttttggaaaataaattgagggttagggt 9534285  T
Q  124 ttgatgatgattctgacgggaaatggtaatggtcatgttaattctgtttgtaatgtgatgtccagaatgaaaacttaacctat 206  Q
    ||||||||||||||||  ||||  |||| || |||||||||||||| ||||||||| ||||  ||||||||||||||| ||||    
T  9534284 ttgatgatgattctgagtggaatgggtattgatcatgttaattctg-ttgtaatgtaatgtttagaatgaaaacttaatctat 9534203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 25 - 216
Target Start/End: Original strand, 14762758 - 14762948
Alignment:
Q  25 taaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattgcaatagcttttggaaaataaattgagggttaggg- 123  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||| |||||||| ||||||||||||||||||     
T  14762758 taaggtaagggtgagactatctctcgataatcataatctataatttctgaaaattgacctaattgc-atag-ttttggaagataaattgagggttagggt 14762855  T
Q  124 ttgatgatgattctgacgggaaat-ggtaatggtcatgttaattctgtttgtaatgtgatgtccagaatgaaaacttaacctatgttgttgctg 216  Q
    |||||||||||||||| ||||||| ||||||| |||||||||||||  ||||||| | |||| |||||||||||||||| || ||||| |||||    
T  14762856 ttgatgatgattctgaagggaaatgggtaatgatcatgttaattct-cttgtaatataatgttcagaatgaaaacttaatctttgttgctgctg 14762948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 27 - 216
Target Start/End: Original strand, 20247791 - 20247979
Alignment:
Q  27 aggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattgcaatagcttttggaaaataaattgagggttaggg-tt 125  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| |||||||||||||||||| ||    
T  20247791 aggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattgc-atag-ttttggaagataaattgagggttagggttt 20247888  T
Q  126 gatgatgattctgacgggaaat-ggtaatggtcatgttaattctgtttgtaatgtgatgtccagaatgaaaacttaacctatgttgttgctg 216  Q
    |||||||||||||| ||||||| ||||||| ||||||||||| |  ||||||| | |||| |||||||||||||||| || ||||| |||||    
T  20247889 gatgatgattctgaagggaaatgggtaatgatcatgttaatt-ttcttgtaatataatgttcagaatgaaaacttaatctttgttgctgctg 20247979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 24 - 206
Target Start/End: Original strand, 23370505 - 23370686
Alignment:
Q  24 ctaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattgcaatagcttttggaaaataaattgagggttaggg 123  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| |||||||| |||||||||    
T  23370505 ctaaggtaagggtgggactatctctcaataatcataatctataatttctgaaaattgacctaattgc-atagtttttggaagataaattgtgggttaggg 23370603  T
Q  124 -ttgatgatgattctgacgggaaatggtaatggtcatgttaattctgtttgtaatgtgatgtccagaatgaaaacttaacctat 206  Q
     |||||||||||||||| |||||  |||| || |||||||||||||| ||||||||| ||||  ||||||||||||||| ||||    
T  23370604 tttgatgatgattctgaggggaatgggtattgatcatgttaattctg-ttgtaatgtaatgtttagaatgaaaacttaatctat 23370686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 27 - 216
Target Start/End: Original strand, 38310802 - 38310990
Alignment:
Q  27 aggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattgcaatagcttttggaaaataaattgagggttaggg-tt 125  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||| |||| |||||||| |||||||||||||||||| ||    
T  38310802 aggtaagggtgagactatctctcgataatcataatctataatttctgaatattgacctaattgc-atag-ttttggaagataaattgagggttagggttt 38310899  T
Q  126 gatgatgattctgacgggaaat-ggtaatggtcatgttaattctgtttgtaatgtgatgtccagaatgaaaacttaacctatgttgttgctg 216  Q
    |||||||||||||| ||||||| ||||||| |||||||||||||  ||||||| | |||| |||||||||||||||| || ||||| |||||    
T  38310900 gatgatgattctgaagggaaatgggtaatgatcatgttaattct-cttgtaatataatgttcagaatgaaaacttaatctttgttgctgctg 38310990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 14 - 206
Target Start/End: Original strand, 16801457 - 16801647
Alignment:
Q  14 ttctgcaaaactaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattgcaatagcttttggaaaataaattg 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||| |||||  ||||||||| | |  ||||||    
T  16801457 ttctgcaaaactaaggtaagggtgagactatctctcaataatcat-atatataatttctgaaaattgacctgattgc-ttagcttttgaagataaaattg 16801554  T
Q  114 agggttagggttgatgatgattctgacgggaaatg-gtaatggtcatgttaattctgtttgtaatgtgatgtccagaatgaaaacttaacctat 206  Q
    | |||||||||||||||||||| ||| | |||  | |||||| ||||||||| | ||  |||||||||||||  ||||||||  ||||||||||    
T  16801555 aaggttagggttgatgatgattttgaggagaatggtgtaatgatcatgttaaatatg-ctgtaatgtgatgtttagaatgaattcttaacctat 16801647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 14 - 108
Target Start/End: Original strand, 41455087 - 41455178
Alignment:
Q  14 ttctgcaaaactaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattgcaatagcttttggaaaata 108  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||| ||||||||||||    
T  41455087 ttctgcaaaactaaggtaagggtgagactatctctcaataatcataatctataatttctg-aaattgacctaattg-aatag-ttttggaaaata 41455178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 24 - 139
Target Start/End: Original strand, 24933828 - 24933941
Alignment:
Q  24 ctaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattgcaatagcttttggaaaataaattgagggttaggg 123  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||| |||||||||||||  |||   ||||||    
T  24933828 ctaaggtaagggtgagactatctctcaataatcataatctataatttctg-aaattgacctaattg-aatag-ttttggaaaataatatgaaaattaggg 24933924  T
Q  124 -ttgatgatgattctga 139  Q
     ||||||||||||||||    
T  24933925 tttgatgatgattctga 24933941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 27 - 206
Target Start/End: Original strand, 55499104 - 55499283
Alignment:
Q  27 aggtaagggtgagactatctctcaataatc-ataatctataatttctg-aaaattgacctaattgcaatagcttttggaaaataaattgagggttagggt 124  Q
    |||||||||||||||||||||||| ||||  ||||| | ||||||| | ||||||||||||| |||   | |||  ||| ||  ||||||||||||||||    
T  55499104 aggtaagggtgagactatctctcattaatagataatatgtaatttcgggaaaattgacctaactgcttaaccttgaggataa--aattgagggttagggt 55499201  T
Q  125 t-gatgatgattctgacgggaaatggtaatggtcatgttaattctgtttgtaatgtgatgtccagaatgaaaacttaacctat 206  Q
    | |||||||||||||| |||||  ||||||| ||||||||||| || |||||||||||||| | |||||||| ||||| ||||    
T  55499202 ttgatgatgattctgaggggaatgggtaatgatcatgttaattatg-ttgtaatgtgatgttcggaatgaaatcttaatctat 55499283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 25 - 86
Target Start/End: Complemental strand, 18929300 - 18929239
Alignment:
Q  25 taaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaa 86  Q
    |||||||||||||||||||||||||||||||||| || ||||||||||||||||||| ||||    
T  18929300 taaggtaagggtgagactatctctcaataatcatgatatataatttctgaaaattgatctaa 18929239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 25 - 89
Target Start/End: Original strand, 17240513 - 17240577
Alignment:
Q  25 taaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattg 89  Q
    |||||||||||||||||||||||||||||||| ||||  |||||||||||||||||| |||||||    
T  17240513 taaggtaagggtgagactatctctcaataatcttaatacataatttctgaaaattgatctaattg 17240577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 24 - 79
Target Start/End: Original strand, 13302240 - 13302295
Alignment:
Q  24 ctaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaatt 79  Q
    ||||||||||||||||| ||||| |||||||||||||| | |||||||||||||||    
T  13302240 ctaaggtaagggtgagattatctttcaataatcataatatgtaatttctgaaaatt 13302295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 24 - 79
Target Start/End: Original strand, 13323787 - 13323842
Alignment:
Q  24 ctaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaatt 79  Q
    ||||||||||||||||| ||||| |||||||||||||| | |||||||||||||||    
T  13323787 ctaaggtaagggtgagattatctttcaataatcataatatgtaatttctgaaaatt 13323842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 24 - 79
Target Start/End: Original strand, 12033444 - 12033499
Alignment:
Q  24 ctaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaatt 79  Q
    |||||||||||||| || ||||| |||||| ||||||| |||||||||||||||||    
T  12033444 ctaaggtaagggtgggattatctttcaatagtcataatatataatttctgaaaatt 12033499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 24 - 79
Target Start/End: Original strand, 13312896 - 13312951
Alignment:
Q  24 ctaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaatt 79  Q
    ||||||||||||||||| ||||| |||||||||||||| | |||||| ||||||||    
T  13312896 ctaaggtaagggtgagattatctttcaataatcataatatgtaatttttgaaaatt 13312951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 24 - 79
Target Start/End: Complemental strand, 17131787 - 17131732
Alignment:
Q  24 ctaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaatt 79  Q
    |||||||||||||| || ||||| |||||| ||||||| |||||||||||||||||    
T  17131787 ctaaggtaagggtgggattatctttcaatagtcataatatataatttctgaaaatt 17131732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 24 - 79
Target Start/End: Complemental strand, 51301644 - 51301589
Alignment:
Q  24 ctaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaatt 79  Q
    ||||||||||||||||| |||||  ||||||||||||| | |||||||||||||||    
T  51301644 ctaaggtaagggtgagattatcttccaataatcataatatgtaatttctgaaaatt 51301589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 24 - 79
Target Start/End: Complemental strand, 14865901 - 14865846
Alignment:
Q  24 ctaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaatt 79  Q
    |||||||||||||| || ||||| |||||| ||||||| | |||||||||||||||    
T  14865901 ctaaggtaagggtgggattatctttcaatagtcataatatgtaatttctgaaaatt 14865846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 24 - 59
Target Start/End: Original strand, 23392819 - 23392854
Alignment:
Q  24 ctaaggtaagggtgagactatctctcaataatcata 59  Q
    |||||||||||||||||||| |||||||||||||||    
T  23392819 ctaaggtaagggtgagactaactctcaataatcata 23392854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 27 - 81
Target Start/End: Complemental strand, 16801081 - 16801027
Alignment:
Q  27 aggtaagggtgagactatctctcaataatcataatctataatttctgaaaattga 81  Q
    ||||||||||||||||| |||||||| ||  |||| ||||| |||||||||||||    
T  16801081 aggtaagggtgagactaactctcaatgattgtaatatataacttctgaaaattga 16801027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 77
Target Start/End: Original strand, 10389443 - 10389496
Alignment:
Q  24 ctaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaa 77  Q
    |||||||||||||| || ||||| ||||| || ||||| |||||||||||||||    
T  10389443 ctaaggtaagggtgggattatctttcaatgattataatgtataatttctgaaaa 10389496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 77
Target Start/End: Original strand, 10414532 - 10414585
Alignment:
Q  24 ctaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaa 77  Q
    |||||||||||||| || ||||| ||||| || ||||| |||||||||||||||    
T  10414532 ctaaggtaagggtgggattatctttcaatgattataatgtataatttctgaaaa 10414585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 77
Target Start/End: Original strand, 10421202 - 10421255
Alignment:
Q  24 ctaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaa 77  Q
    |||||||||||||| || ||||| ||||| || ||||| |||||||||||||||    
T  10421202 ctaaggtaagggtgggattatctttcaatgattataatgtataatttctgaaaa 10421255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 24 - 60
Target Start/End: Original strand, 2247649 - 2247685
Alignment:
Q  24 ctaaggtaagggtgagactatctctcaataatcataa 60  Q
    |||||||||||||||||||| ||||||||||| ||||    
T  2247649 ctaaggtaagggtgagactaactctcaataattataa 2247685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 75
Target Start/End: Original strand, 10833303 - 10833359
Alignment:
Q  19 caaaactaaggtaagggtgagactatctctcaataatcataatctataatttctgaa 75  Q
    ||||||||||||||||||||||||| |  ||| |||||||| | ||||| |||||||    
T  10833303 caaaactaaggtaagggtgagactaacattcagtaatcatagtgtataaattctgaa 10833359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025 (Bit Score: 128; Significance: 3e-66; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 27 - 216
Target Start/End: Original strand, 14398 - 14587
Alignment:
Q  27 aggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattgcaatagcttttggaaaataaattgagggttaggg-tt 125  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| |||||||||||||||||| ||    
T  14398 aggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattgc-atagtttttggaagataaattgagggttagggttt 14496  T
Q  126 gatgatgattctgacgggaaat-ggtaatggtcatgttaattctgtttgtaatgtgatgtccagaatgaaaacttaacctatgttgttgctg 216  Q
    |||||||||||||| ||||||| ||||||| |||||||||||||| |||||||||||||| | |||||||||||||| ||||| ||||||||    
T  14497 gatgatgattctgaagggaaatgggtaatgatcatgttaattctg-ttgtaatgtgatgttccgaatgaaaacttaatctatgctgttgctg 14587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026 (Bit Score: 125; Significance: 2e-64; HSPs: 2)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 14 - 216
Target Start/End: Original strand, 11840 - 12041
Alignment:
Q  14 ttctgcaaaactaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattgcaatagcttttggaaaataaattg 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||    
T  11840 ttctgcaaaactaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattgc-atag-ttttggaaaataaattg 11937  T
Q  114 agggttaggg-ttgatgatgattctgacgggaaat-ggtaatggtcatgttaattctgtttgtaatgtgatgtccagaatgaaaacttaacctatgttgt 211  Q
    || ||||||| |||||||||||||||| ||||||| ||||||| |||||||||||||  ||||||| | || | |||||||||||||||| || ||||||    
T  11938 agagttagggtttgatgatgattctgaagggaaatgggtaatgatcatgttaattct-cttgtaatataatcttcagaatgaaaacttaatctttgttgt 12036  T
Q  212 tgctg 216  Q
    |||||    
T  12037 tgctg 12041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026; HSP #2
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 24 - 206
Target Start/End: Complemental strand, 111741 - 111561
Alignment:
Q  24 ctaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattgcaatagcttttggaaaataaattgagggttaggg 123  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||    
T  111741 ctaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattgc-atag-ttttggaaaataaattgagggttaggg 111644  T
Q  124 -ttgatgatgattctgacgggaaatggtaatggtcatgttaattctgtttgtaatgtgatgtccagaatgaaaacttaacctat 206  Q
     |||||||||||||||| |||||  |||| || |||||||||||||| ||||||||| ||||  ||||||||||||||| ||||    
T  111643 tttgatgatgattctgaggggaatgggtattgatcatgttaattctg-ttgtaatgtaatgtttagaatgaaaacttaatctat 111561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 122; Significance: 1e-62; HSPs: 28)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 21 - 213
Target Start/End: Complemental strand, 14423043 - 14422852
Alignment:
Q  21 aaactaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattgcaatagcttttggaaaataaattgagggtta 120  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| |||||||||||||||    
T  14423043 aaactaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattgc-atagtttttggaagataaattgagggtta 14422945  T
Q  121 ggg-ttgatgatgattctgacgggaaatggtaatggtcatgttaattctgtttgtaatgtgatgtccagaatgaaaacttaacctatgttgttg 213  Q
    ||| |||||||||||||||| |||||  |||| || |||||||||||||| ||||||||| ||||  ||||||||||||||| |||| ||||||    
T  14422944 gggtttgatgatgattctgaggggaatgggtattgatcatgttaattctg-ttgtaatgtaatgtttagaatgaaaacttaatctatattgttg 14422852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 20 - 216
Target Start/End: Complemental strand, 18873420 - 18873225
Alignment:
Q  20 aaaactaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattgcaatagcttttggaaaataaattgagggtt 119  Q
    ||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||| |||| |||||||| ||||||||||||||    
T  18873420 aaaactaaggtaagggtgagactttctctcgataatcataatctataatttctgaaaattgacctaattgc-atag-ttttggaagataaattgagggtt 18873323  T
Q  120 aggg-ttgatgatgattctgacgggaaat-ggtaatggtcatgttaattctgtttgtaatgtgatgtccagaatgaaaacttaacctatgttgttgctg 216  Q
    |||| |||||||||||||||| ||||||| ||||||| |||||||||||||  ||||||| | |||| |||||||||||||||| || ||||| |||||    
T  18873322 agggtttgatgatgattctgaagggaaatgggtaatgatcatgttaattct-cttgtaatataatgttcagaatgaaaacttaatctttgttgctgctg 18873225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 25 - 216
Target Start/End: Complemental strand, 15168230 - 15168040
Alignment:
Q  25 taaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattgcaatagcttttggaaaataaattgagggttaggg- 123  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||| |||||||| ||||||||||||||||||     
T  15168230 taaggtaagggtgagactatctctcgataatcataatctataatttctgaaaattgacctaattgc-atag-ttttggaagataaattgagggttagggt 15168133  T
Q  124 ttgatgatgattctgacgggaaat-ggtaatggtcatgttaattctgtttgtaatgtgatgtccagaatgaaaacttaacctatgttgttgctg 216  Q
    |||||||||||||||| ||||||| ||||||| |||||||||||||  ||||||| | |||| |||||||||||||||| || ||||| |||||    
T  15168132 ttgatgatgattctgaagggaaatgggtaatgatcatgttaattct-cttgtaatataatgttcagaatgaaaacttaatctttgttgctgctg 15168040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 14 - 216
Target Start/End: Original strand, 12709833 - 12710033
Alignment:
Q  14 ttctgcaaaactaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattgcaatagcttttggaaaataaattg 113  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| |||||||||||||||| |||| |||||||||||||||||    
T  12709833 ttctgcaaaactaaggtaagggtgagactatctctcaataatcataatttataattcctg-aaattgacctaattgc-atag-ttttggaaaataaattg 12709929  T
Q  114 agggttaggg-ttgatgatgattctgacgggaaat-ggtaatggtcatgttaattctgtttgtaatgtgatgtccagaatgaaaacttaacctatgttgt 211  Q
    |||||||||| |||||||||||| ||| | ||||| ||||||| ||||||||||||| |||||||| | |||| ||||||  |||||||| || ||||||    
T  12709930 agggttagggtttgatgatgattatgaagagaaatgggtaatgatcatgttaattctatttgtaatataatgttcagaatataaacttaatct-tgttgt 12710028  T
Q  212 tgctg 216  Q
    |||||    
T  12710029 tgctg 12710033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 14 - 216
Target Start/End: Original strand, 13122904 - 13123104
Alignment:
Q  14 ttctgcaaaactaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattgcaatagcttttggaaaataaattg 113  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| |||||||||||||||| |||| |||||||||||||||||    
T  13122904 ttctgcaaaactaaggtaagggtgagactatctctcaataatcataatttataattcctg-aaattgacctaattgc-atag-ttttggaaaataaattg 13123000  T
Q  114 agggttaggg-ttgatgatgattctgacgggaaat-ggtaatggtcatgttaattctgtttgtaatgtgatgtccagaatgaaaacttaacctatgttgt 211  Q
    |||||||||| |||||||||||| ||| | ||||| ||||||| ||||||||||||| |||||||| | |||| ||||||  |||||||| || ||||||    
T  13123001 agggttagggtttgatgatgattatgaagagaaatgggtaatgatcatgttaattctatttgtaatataatgttcagaatataaacttaatct-tgttgt 13123099  T
Q  212 tgctg 216  Q
    |||||    
T  13123100 tgctg 13123104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 29 - 216
Target Start/End: Original strand, 10895795 - 10895981
Alignment:
Q  29 gtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattgcaatagcttttggaaaataaattgagggttaggg-ttga 127  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||| |||||||| |||||||| ||||||||| ||||    
T  10895795 gtaagggtgagactatctctcaataatcataatctataatttttgaaaattgacctaattgc-atagtttttggaagataaattgtgggttagggtttga 10895893  T
Q  128 tgatgattctgacgggaaatggtaatggtcatgttaattctgtttgtaatgtgatgtccagaatgaaaacttaacctatgttgttgctg 216  Q
    |||||||||||| |||||  |||| || |||||||||||||  ||||||| | |||| |||||||||||||||| || ||||| |||||    
T  10895894 tgatgattctgaggggaatgggtattgatcatgttaattct-cttgtaatataatgttcagaatgaaaacttaatctttgttgctgctg 10895981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 25 - 206
Target Start/End: Complemental strand, 16009631 - 16009452
Alignment:
Q  25 taaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattgcaatagcttttggaaaataaattgagggtt-aggg 123  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   | |||||||| |||||||| ||||| |||     
T  16009631 taaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattgca--tggttttggaagataaattgtgggttaaggt 16009534  T
Q  124 ttgatgatgattctgacgggaaatggtaatggtcatgttaattctgtttgtaatgtgatgtccagaatgaaaacttaacctat 206  Q
    |||||||||||||||| |||||  |||| || |||||||||||||| ||||||||| ||||  ||||||||||||||| ||||    
T  16009533 ttgatgatgattctgaggggaatgggtattgatcatgttaattctg-ttgtaatgtaatgtttagaatgaaaacttaatctat 16009452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 14 - 216
Target Start/End: Complemental strand, 13743774 - 13743574
Alignment:
Q  14 ttctgcaaaactaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattgcaatagcttttggaaaataaattg 113  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| |||||||||||||||| |||| |||||||||||||||||    
T  13743774 ttctgcaaaactaaggtaagggtgagactatctctcaataatcataatttataattcctg-aaattgacctaattgc-atag-ttttggaaaataaattg 13743678  T
Q  114 agggttaggg-ttgatgatgattctgacgggaaat-ggtaatggtcatgttaattctgtttgtaatgtgatgtccagaatgaaaacttaacctatgttgt 211  Q
    |||||||||| |||||||||||| ||| | ||||| ||||||| ||||||||||| |  ||||| | || ||| |||| |||| |||||| ||||||| |    
T  13743677 agggttagggtttgatgatgattatgaagagaaatgggtaatgatcatgttaatt-ttcttgtattatgctgttcagattgaagacttaatctatgttat 13743579  T
Q  212 tgctg 216  Q
    |||||    
T  13743578 tgctg 13743574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 14 - 139
Target Start/End: Original strand, 12590633 - 12590756
Alignment:
Q  14 ttctgcaaaactaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattgcaatagcttttggaaaataaattg 113  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||| |||||||||||||  ||    
T  12590633 ttctgcaaaactaaggtaagggtgagactatctctcaataatcataatctataatttctg-aaattgacctaattg-aatag-ttttggaaaataatatg 12590729  T
Q  114 agggttaggg-ttgatgatgattctga 139  Q
    |  ||||||| ||||||||||||||||    
T  12590730 aaagttagggtttgatgatgattctga 12590756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 14 - 139
Target Start/End: Complemental strand, 13007497 - 13007374
Alignment:
Q  14 ttctgcaaaactaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattgcaatagcttttggaaaataaattg 113  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||| |||||||||||||  ||    
T  13007497 ttctgcaaaactaaggtaagggtgagactatctctcaataatcataatctataatttctg-aaattgacctaattg-aatag-ttttggaaaataagatg 13007401  T
Q  114 agggttaggg-ttgatgatgattctga 139  Q
    |  ||||||| ||||||||||||||||    
T  13007400 aaagttagggtttgatgatgattctga 13007374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 27 - 135
Target Start/End: Complemental strand, 16677348 - 16677239
Alignment:
Q  27 aggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattgcaatagcttttggaaaat-aaattgagggttaggg-t 124  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||| |||||||| || ||||| |||||||||| |    
T  16677348 aggtaagggtgagactatctctcaataatcataatctataatttctaaaaattgacctaattgc-atagtttttggaagataaaattaagggttagggtt 16677250  T
Q  125 tgatgatgatt 135  Q
    |||||||||||    
T  16677249 tgatgatgatt 16677239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 27 - 135
Target Start/End: Complemental strand, 17651584 - 17651475
Alignment:
Q  27 aggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattgcaatagcttttggaaaat-aaattgagggttaggg-t 124  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||| |||||||| || ||||| |||||||||| |    
T  17651584 aggtaagggtgagactatctctcaataatcataatctataatttctaaaaattgacctaattgc-atagtttttggaagataaaattaagggttagggtt 17651486  T
Q  125 tgatgatgatt 135  Q
    |||||||||||    
T  17651485 tgatgatgatt 17651475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 14 - 80
Target Start/End: Original strand, 21230949 - 21231015
Alignment:
Q  14 ttctgcaaaactaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattg 80  Q
    ||||||||| |||||||||||||||||||||||||||||||||||| | ||||||||||||||||||    
T  21230949 ttctgcaaatctaaggtaagggtgagactatctctcaataatcatagtatataatttctgaaaattg 21231015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 25 - 80
Target Start/End: Original strand, 11382871 - 11382926
Alignment:
Q  25 taaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattg 80  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  11382871 taaggtaagggtgagactatctctcaataatcataatatataatttctgaaaattg 11382926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 25 - 80
Target Start/End: Original strand, 11389348 - 11389403
Alignment:
Q  25 taaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattg 80  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  11389348 taaggtaagggtgagactatctctcaataatcataatatataatttctgaaaattg 11389403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 14 - 80
Target Start/End: Original strand, 20311039 - 20311107
Alignment:
Q  14 ttctgcaaaa--ctaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattg 80  Q
    ||||||||||  |||||||||||||||||||||||||||||||||||||  ||||||||||||||||||    
T  20311039 ttctgcaaaaatctaaggtaagggtgagactatctctcaataatcataacgtataatttctgaaaattg 20311107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 25 - 88
Target Start/End: Complemental strand, 13679548 - 13679485
Alignment:
Q  25 taaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaatt 88  Q
    |||||||||||||||||||||| ||||| ||||| || |||||||| |||||||||| ||||||    
T  13679548 taaggtaagggtgagactatctttcaatgatcatgatatataatttttgaaaattgatctaatt 13679485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 24 - 79
Target Start/End: Complemental strand, 2971309 - 2971254
Alignment:
Q  24 ctaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaatt 79  Q
    |||||||||||||| || ||||| |||||| ||||||| |||||||||||||||||    
T  2971309 ctaaggtaagggtgggattatctttcaatagtcataatttataatttctgaaaatt 2971254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 24 - 79
Target Start/End: Original strand, 20906461 - 20906516
Alignment:
Q  24 ctaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaatt 79  Q
    |||||||||||||| || ||||| |||||| ||||||| |||||||||||||||||    
T  20906461 ctaaggtaagggtgggattatctttcaatagtcataatatataatttctgaaaatt 20906516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 25 - 79
Target Start/End: Complemental strand, 11311113 - 11311059
Alignment:
Q  25 taaggtaagggtgagactatctctcaataatcataatctataatttctgaaaatt 79  Q
    ||||||||||||||||||||||||||||||| ||| | || ||||||| ||||||    
T  11311113 taaggtaagggtgagactatctctcaataataatagtgtagaatttctaaaaatt 11311059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 19 - 60
Target Start/End: Original strand, 831628 - 831669
Alignment:
Q  19 caaaactaaggtaagggtgagactatctctcaataatcataa 60  Q
    ||||||||||||||||||||||||| ||||||||||| ||||    
T  831628 caaaactaaggtaagggtgagactaactctcaataattataa 831669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 19 - 60
Target Start/End: Original strand, 1196808 - 1196849
Alignment:
Q  19 caaaactaaggtaagggtgagactatctctcaataatcataa 60  Q
    ||||||||||||||||||||||||| ||||||||||| ||||    
T  1196808 caaaactaaggtaagggtgagactaactctcaataattataa 1196849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 19 - 60
Target Start/End: Complemental strand, 34958619 - 34958578
Alignment:
Q  19 caaaactaaggtaagggtgagactatctctcaataatcataa 60  Q
    ||||||||||||||||||||||||| ||||||||||| ||||    
T  34958619 caaaactaaggtaagggtgagactaactctcaataattataa 34958578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 25 - 81
Target Start/End: Complemental strand, 46626017 - 46625961
Alignment:
Q  25 taaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattga 81  Q
    |||| |||||||||||||| |||||||| || ||||| ||||||||| |||||||||    
T  46626017 taagataagggtgagactaactctcaatgattataatatataatttcggaaaattga 46625961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 13 - 80
Target Start/End: Complemental strand, 148686 - 148619
Alignment:
Q  13 attctgcaaaactaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattg 80  Q
    ||||||||||||||||||||||||||| ||| |  ||||| || ||||| |||  |||||||||||||    
T  148686 attctgcaaaactaaggtaagggtgaggctaaccttcaatgattataatatatggtttctgaaaattg 148619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 24 - 79
Target Start/End: Original strand, 29181109 - 29181164
Alignment:
Q  24 ctaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaatt 79  Q
    |||||||||||||| || ||||| |||||| ||||||| | |||||||||||||||    
T  29181109 ctaaggtaagggtgggattatctttcaatagtcataatatgtaatttctgaaaatt 29181164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 77
Target Start/End: Complemental strand, 31155449 - 31155396
Alignment:
Q  24 ctaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaa 77  Q
    |||||||||||||| || ||||| ||||| || ||||| |||||||||||||||    
T  31155449 ctaaggtaagggtgggattatctttcaatgattataatatataatttctgaaaa 31155396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 24 - 76
Target Start/End: Complemental strand, 16091130 - 16091078
Alignment:
Q  24 ctaaggtaagggtgagactatctctcaataatcataatctataatttctgaaa 76  Q
    |||||||||||||| || ||||| |||||| ||||||| | ||||||||||||    
T  16091130 ctaaggtaagggtgggattatctttcaatagtcataatatgtaatttctgaaa 16091078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 120; Significance: 2e-61; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 13 - 206
Target Start/End: Original strand, 38144525 - 38144716
Alignment:
Q  13 attctgcaaaactaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattgcaatagcttttggaaaataaatt 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |  ||||||||||||||||    
T  38144525 attctgcaaaactaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattgcataa--ttttggaaaataaatt 38144622  T
Q  113 gagggttaggg-ttgatgatgattctgacgggaaatggtaatggtcatgttaattctgtttgtaatgtgatgtccagaatgaaaacttaacctat 206  Q
    ||||||||||| |||||||||||||||| |||||  |||| || |||||||||||||  ||||||||| ||||  ||||||||||||||| ||||    
T  38144623 gagggttagggtttgatgatgattctgaggggaatgggtattgatcatgttaattct-attgtaatgtaatgtttagaatgaaaacttaatctat 38144716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 20 - 216
Target Start/End: Complemental strand, 22751201 - 22751006
Alignment:
Q  20 aaaactaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattgcaatagcttttggaaaataaattgagggtt 119  Q
    ||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||| |||| |||||||| ||||||||||||||    
T  22751201 aaaactaaggtaagggtgagactttctctcgataatcataatctataatttctgaaaattgacctaattgc-atag-ttttggaagataaattgagggtt 22751104  T
Q  120 aggg-ttgatgatgattctgacgggaaat-ggtaatggtcatgttaattctgtttgtaatgtgatgtccagaatgaaaacttaacctatgttgttgctg 216  Q
    |||| |||||||||||||||| ||||||| ||||||| |||||||||||||  ||||||| | |||| |||||||||||||||| || ||||| |||||    
T  22751103 agggtttgatgatgattctgaagggaaatgggtaatgatcatgttaattct-cttgtaatataatgttcagaatgaaaacttaatctttgttgctgctg 22751006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 25 - 206
Target Start/End: Original strand, 28370055 - 28370234
Alignment:
Q  25 taaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattgcaatagcttttggaaaataaattgagggttaggg- 123  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||     
T  28370055 taaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattgc-atag-ttttggaaaataaattgagggttagggt 28370152  T
Q  124 ttgatgatgattctgacgggaaatggtaatggtcatgttaattctgtttgtaatgtgatgtccagaatgaaaacttaacctat 206  Q
    |||||||||||| ||| |||||  |||| || |||||||||||||| |||||| || ||||  ||||||||||||||| ||||    
T  28370153 ttgatgatgattttgaggggaatgggtattgatcatgttaattctg-ttgtaacgtaatgtttagaatgaaaacttaatctat 28370234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 25 - 206
Target Start/End: Complemental strand, 19512441 - 19512261
Alignment:
Q  25 taaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattgcaatagcttttggaaaataaattgagggttaggg- 123  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| ||||||||||||||||||     
T  19512441 taaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattgc-atagtttttggaagataaattgagggttagggt 19512343  T
Q  124 ttgatgatgattctgacgggaaatggtaatggtcatgttaattctgtttgtaatgtgatgtccagaatgaaaacttaacctat 206  Q
    |||||||||||| ||| |||||  |||| || |||||||||||||  |||||| || ||||  ||||||||||||||| ||||    
T  19512342 ttgatgatgattttgaggggaatgggtattgatcatgttaattct-attgtaacgtaatgtttagaatgaaaacttaatctat 19512261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 20 - 139
Target Start/End: Complemental strand, 23528690 - 23528573
Alignment:
Q  20 aaaactaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattgcaatagcttttggaaaataaattgagggtt 119  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||| |||||||||||||  |||  |||    
T  23528690 aaaactaaggtaagggtgagactatctctcaataatcataatctataatttctg-aaattgacctaattg-aatag-ttttggaaaataagatgaaagtt 23528594  T
Q  120 aggg-ttgatgatgattctga 139  Q
    |||| ||||||||||||||||    
T  23528593 agggtttgatgatgattctga 23528573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 25 - 89
Target Start/End: Original strand, 18407944 - 18408008
Alignment:
Q  25 taaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattg 89  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||    
T  18407944 taaggtaagggtgagactatctctcaataatcataatatataatttctgaaaattgatctaattg 18408008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 14 - 80
Target Start/End: Original strand, 22438736 - 22438803
Alignment:
Q  14 ttctgcaaaa-ctaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattg 80  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  22438736 ttctgcaaaatctaaggtaagggtgagactatctctcaataatcataatgtataatttctgaaaattg 22438803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 25 - 89
Target Start/End: Original strand, 23111200 - 23111264
Alignment:
Q  25 taaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattg 89  Q
    ||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| |||||||    
T  23111200 taaggtaagggtgagactatctctcaataatcatagtatataatttctgaaaattgatctaattg 23111264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 24 - 79
Target Start/End: Complemental strand, 19236955 - 19236900
Alignment:
Q  24 ctaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaatt 79  Q
    |||||||||||||| || ||||| |||||| ||||||| |||||||||||||||||    
T  19236955 ctaaggtaagggtgggattatctttcaatagtcataatatataatttctgaaaatt 19236900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 13 - 80
Target Start/End: Complemental strand, 42961633 - 42961566
Alignment:
Q  13 attctgcaaaactaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattg 80  Q
    ||||||||||||||||||||||||||| ||| |  ||||| || ||||| ||| ||||||||||||||    
T  42961633 attctgcaaaactaaggtaagggtgaggctaaccttcaatgattataatatatgatttctgaaaattg 42961566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 24 - 77
Target Start/End: Complemental strand, 22461211 - 22461158
Alignment:
Q  24 ctaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaa 77  Q
    |||||||||||||| || ||||| |||||| ||||||| |||||||||||||||    
T  22461211 ctaaggtaagggtgggattatctttcaatagtcataatatataatttctgaaaa 22461158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 24 - 77
Target Start/End: Complemental strand, 22467835 - 22467782
Alignment:
Q  24 ctaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaa 77  Q
    |||||||||||||| || ||||| |||||| ||||||| |||||||||||||||    
T  22467835 ctaaggtaagggtgggattatctttcaatagtcataatatataatttctgaaaa 22467782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 24 - 79
Target Start/End: Complemental strand, 20781799 - 20781744
Alignment:
Q  24 ctaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaatt 79  Q
    |||||||||||||| || ||||| |||||||| ||||| ||| |||||||||||||    
T  20781799 ctaaggtaagggtgggattatctttcaataattataatatatgatttctgaaaatt 20781744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 53
Target Start/End: Original strand, 17021913 - 17021942
Alignment:
Q  24 ctaaggtaagggtgagactatctctcaata 53  Q
    ||||||||||||||||||||||||||||||    
T  17021913 ctaaggtaagggtgagactatctctcaata 17021942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 78
Target Start/End: Complemental strand, 34830150 - 34830086
Alignment:
Q  13 attctgcaaaactaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaat 78  Q
    |||||||||  |||||||||||||| || ||||| ||||||||  |||| ||||||||||||||||    
T  34830150 attctgcaattctaaggtaagggtgggattatctttcaataat-ttaatgtataatttctgaaaat 34830086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029 (Bit Score: 118; Significance: 3e-60; HSPs: 1)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 14 - 216
Target Start/End: Complemental strand, 111948 - 111746
Alignment:
Q  14 ttctgcaaaactaaggtaagggtgagactatctctcaataatcataatctataatttctg-aaaattgacctaattgcaatagcttttggaaaataaatt 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||| |||||||| |||||||    
T  111948 ttctgcaaaactaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaaattgacctaattgc-atag-ttttggaagataaatt 111851  T
Q  113 gagggttaggg-ttgatgatgattctgacgggaaat-ggtaatggtcatgttaattctgtttgtaatgtgatgtccagaatgaaaacttaacctatgttg 210  Q
    ||||||||||| |||||||||||||||| ||||||| ||||||| |||||||||||||  ||||||| | |||| |||||||||||||||| || |||||    
T  111850 gagggttagggtttgatgatgattctgaagggaaatgggtaatgatcatgttaattct-cttgtaatataatgttcagaatgaaaacttaatctttgttg 111752  T
Q  211 ttgctg 216  Q
     |||||    
T  111751 ctgctg 111746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 115; Significance: 2e-58; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 25 - 206
Target Start/End: Original strand, 20437024 - 20437204
Alignment:
Q  25 taaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattgcaatagcttttggaaaataaattgagggttaggg- 123  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| ||||||||||||||||||     
T  20437024 taaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattgc-atagtttttggaagataaattgagggttagggt 20437122  T
Q  124 ttgatgatgattctgacgggaaatggtaatggtcatgttaattctgtttgtaatgtgatgtccagaatgaaaacttaacctat 206  Q
    |||||||||||||||| |||||  |||| || ||||||||||| || ||||||||| |||| |||||||||||||||| ||||    
T  20437123 ttgatgatgattctgaggggaatgggtattgatcatgttaattatg-ttgtaatgtaatgttcagaatgaaaacttaatctat 20437204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 14 - 139
Target Start/End: Complemental strand, 41112100 - 41111977
Alignment:
Q  14 ttctgcaaaactaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattgcaatagcttttggaaaataaattg 113  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||| ||||| |||||||  ||    
T  41112100 ttctgcaaaactaaggtaagggtgagactatctctcaataatcataatctataatttctg-aaattgacctaattg-aatag-ttttgaaaaataagatg 41112004  T
Q  114 agggttaggg-ttgatgatgattctga 139  Q
    |  ||||||| ||||||||||||||||    
T  41112003 aaagttagggtttgatgatgattctga 41111977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 25 - 89
Target Start/End: Complemental strand, 32651627 - 32651563
Alignment:
Q  25 taaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattg 89  Q
    ||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| |||||||    
T  32651627 taaggtaagggtgagactatctctcaataatcatagtatataatttctgaaaattgatctaattg 32651563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 25 - 89
Target Start/End: Complemental strand, 18712854 - 18712790
Alignment:
Q  25 taaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattg 89  Q
    ||||||| ||||||||||||||||||||||||||| | ||||||||||||||||||| |||||||    
T  18712854 taaggtatgggtgagactatctctcaataatcatagtatataatttctgaaaattgatctaattg 18712790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 25 - 80
Target Start/End: Original strand, 19663517 - 19663572
Alignment:
Q  25 taaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattg 80  Q
    ||||||||||||||||||||||||| ||||||||| | ||||||||||||||||||    
T  19663517 taaggtaagggtgagactatctctcgataatcatagtatataatttctgaaaattg 19663572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 25 - 81
Target Start/End: Complemental strand, 20805376 - 20805320
Alignment:
Q  25 taaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattga 81  Q
    ||||||||||||||| ||| |||||||| |||||||| |||||||||||||||||||    
T  20805376 taaggtaagggtgaggctaactctcaatgatcataatatataatttctgaaaattga 20805320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 25 - 80
Target Start/End: Complemental strand, 11158148 - 11158093
Alignment:
Q  25 taaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattg 80  Q
    ||||||||||||||||||| |||||||| ||| |||| ||||||||||||||||||    
T  11158148 taaggtaagggtgagactaactctcaatgatcttaatatataatttctgaaaattg 11158093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 27 - 81
Target Start/End: Original strand, 10811785 - 10811839
Alignment:
Q  27 aggtaagggtgagactatctctcaataatcataatctataatttctgaaaattga 81  Q
    ||||||||||||||||||||||||||||| ||| | || ||||||||||||||||    
T  10811785 aggtaagggtgagactatctctcaataataatagtgtagaatttctgaaaattga 10811839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 24 - 79
Target Start/End: Original strand, 20851132 - 20851187
Alignment:
Q  24 ctaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaatt 79  Q
    |||||||||||||| || ||||| |||||| ||||||| |||||||||||||||||    
T  20851132 ctaaggtaagggtgggattatctttcaatagtcataatatataatttctgaaaatt 20851187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 24 - 79
Target Start/End: Original strand, 20857759 - 20857814
Alignment:
Q  24 ctaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaatt 79  Q
    |||||||||||||| || ||||| |||||| ||||||| |||||||||||||||||    
T  20857759 ctaaggtaagggtgggattatctttcaatagtcataatatataatttctgaaaatt 20857814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 24 - 79
Target Start/End: Complemental strand, 21706331 - 21706276
Alignment:
Q  24 ctaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaatt 79  Q
    |||||||||||||| || ||||| |||||| ||||||| |||||||||||||||||    
T  21706331 ctaaggtaagggtgggattatctttcaatagtcataatatataatttctgaaaatt 21706276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 24 - 79
Target Start/End: Complemental strand, 21710873 - 21710818
Alignment:
Q  24 ctaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaatt 79  Q
    |||||||||||||| || ||||| |||||| ||||||| |||||||||||||||||    
T  21710873 ctaaggtaagggtgggattatctttcaatagtcataatatataatttctgaaaatt 21710818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 25 - 55
Target Start/End: Complemental strand, 24476380 - 24476350
Alignment:
Q  25 taaggtaagggtgagactatctctcaataat 55  Q
    |||||||||||||||||||||||||||||||    
T  24476380 taaggtaagggtgagactatctctcaataat 24476350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 25 - 55
Target Start/End: Original strand, 25091418 - 25091448
Alignment:
Q  25 taaggtaagggtgagactatctctcaataat 55  Q
    |||||||||||||||||||||||||||||||    
T  25091418 taaggtaagggtgagactatctctcaataat 25091448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 59
Target Start/End: Complemental strand, 18271371 - 18271338
Alignment:
Q  26 aaggtaagggtgagactatctctcaataatcata 59  Q
    |||||||||||||||||| |||||||||||||||    
T  18271371 aaggtaagggtgagactaactctcaataatcata 18271338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 59
Target Start/End: Complemental strand, 18276025 - 18275992
Alignment:
Q  26 aaggtaagggtgagactatctctcaataatcata 59  Q
    |||||||||||||||||| |||||||||||||||    
T  18276025 aaggtaagggtgagactaactctcaataatcata 18275992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 114; Significance: 8e-58; HSPs: 31)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 14 - 206
Target Start/End: Original strand, 10986170 - 10986361
Alignment:
Q  14 ttctgcaaaactaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattgcaatagcttttggaaaataaattg 113  Q
    ||||||||  ||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||| |||| |||||||| ||||||||    
T  10986170 ttctgcaattctaaggtaagggtgagactatctttcaataatcataatctataatttctaaaaattgacctaattgc-atagtttttggaagataaattg 10986268  T
Q  114 agggttaggg-ttgatgatgattctgacgggaaatggtaatggtcatgttaattctgtttgtaatgtgatgtccagaatgaaaacttaacctat 206  Q
    |||||||||| |||||||||||||||| |||||  |||| || |||||||||||||| ||||||||| |||| |||||||||||||||| ||||    
T  10986269 agggttagggtttgatgatgattctgaggggaatgggtattgatcatgttaattctg-ttgtaatgtaatgttcagaatgaaaacttaatctat 10986361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 25 - 206
Target Start/End: Complemental strand, 23839253 - 23839073
Alignment:
Q  25 taaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattgcaatagcttttggaaaataaattgagggttaggg- 123  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||  ||||||| ||||||||||||||||||     
T  23839253 taaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattgc-atagtgtttggaagataaattgagggttagggt 23839155  T
Q  124 ttgatgatgattctgacgggaaatggtaatggtcatgttaattctgtttgtaatgtgatgtccagaatgaaaacttaacctat 206  Q
    |||||||||||||| | |||||  |||| || |||||||||||||| ||||||||| |||| |||||||||||||||| ||||    
T  23839154 ttgatgatgattctaaggggaatgggtattgatcatgttaattctg-ttgtaatgtaatgttcagaatgaaaacttaatctat 23839073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 25 - 213
Target Start/End: Complemental strand, 4477912 - 4477725
Alignment:
Q  25 taaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattgcaatagcttttggaaaataaattgagggttaggg- 123  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| |||||||| |||||||||     
T  4477912 taaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattgc-atagtttttggaagataaattgtgggttagggt 4477814  T
Q  124 ttgatgatgattctgacgggaaatggtaatggtcatgttaattctgtttgtaatgtgatgtccagaatgaaaacttaacctatgttgttg 213  Q
    |||||||||||||||| |||||  |||| || ||||| |||||||| ||||||||| ||||  ||||||||||||||| |||| ||||||    
T  4477813 ttgatgatgattctgaggggaatgggtattgatcatgctaattctg-ttgtaatgtaatgtttagaatgaaaacttaatctatattgttg 4477725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 14 - 213
Target Start/End: Complemental strand, 18800503 - 18800305
Alignment:
Q  14 ttctgcaaaactaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattgcaatagcttttggaaaata-aatt 112  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||| |||||||||||| ||||    
T  18800503 ttctgcaaaactaatgtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattgc-ttag-ttttggaaaatagaatt 18800406  T
Q  113 gagggttaggg-ttgatgatgattctgacgggaaatggtaatggtcatgttaattctgtttgtaatgtgatgtccagaatgaaaacttaacctatgttgt 211  Q
    ||||||||||| |||||||||||||||  |||||   |||||| |||||||||||||| |||||||||||||| || ||||||| ||||| |||| ||||    
T  18800405 gagggttagggtttgatgatgattctggagggaatgagtaatgatcatgttaattctg-ttgtaatgtgatgttcaaaatgaaatcttaatctatattgt 18800307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 25 - 216
Target Start/End: Complemental strand, 23057993 - 23057803
Alignment:
Q  25 taaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattgcaatagcttttggaaaataaattgagggttaggg- 123  Q
    ||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||| |||| |||||||| ||||||||||||||||||     
T  23057993 taaggtaagggtgagactatctctcgataatcataatctataattcctgaaaattgacctaattgc-atag-ttttggaagataaattgagggttagggt 23057896  T
Q  124 ttgatgatgattctgacgggaaat-ggtaatggtcatgttaattctgtttgtaatgtgatgtccagaatgaaaacttaacctatgttgttgctg 216  Q
    |||||||||||||||| ||||||| ||||||| |||||||||||||  ||||||| | |||| |||||||||||||||| || ||||| |||||    
T  23057895 ttgatgatgattctgaagggaaatgggtaatgatcatgttaattct-cttgtaatataatgttcagaatgaaaacttaatctttgttgctgctg 23057803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 14 - 216
Target Start/End: Original strand, 29614136 - 29614337
Alignment:
Q  14 ttctgcaaaactaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattgcaatagcttttggaaaataaattg 113  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||  ||| | |||||||||||    
T  29614136 ttctgcaaaactaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctagttgc-ataattttggaaaaataaattg 29614234  T
Q  114 agggttaggg-ttgatgatgattctgacgggaaat-ggtaatggtcatgttaattctgtttgtaatgtgatgtccagaatgaaaacttaacctatgttgt 211  Q
    |||||||||| |||||||||||| ||| ||||||| ||||||| |||||||||||||  ||||| ||  ||||  ||||||||||||||| || ||||||    
T  29614235 agggttagggtttgatgatgattatgaagggaaatgggtaatgatcatgttaattct-cttgtattg-aatgtttagaatgaaaacttaatctttgttgt 29614332  T
Q  212 tgctg 216  Q
    |||||    
T  29614333 tgctg 29614337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 14 - 159
Target Start/End: Original strand, 930085 - 930229
Alignment:
Q  14 ttctgcaaaactaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattgcaatagcttttggaaaataaattg 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||  |||| ||||| |||||||||||    
T  930085 ttctgcaaaactaaggtaagggtgagactatctctcaataatcataatctatagtttctgaaaattgacctaattg-tatag-ttttgaaaaataaattg 930182  T
Q  114 agggttaggg-ttgatgatgattctgacgggaaatggtaatggtcat 159  Q
    |||||||||| ||||||||| |||||| |||||  ||||||| ||||    
T  930183 agggttagggtttgatgatgtttctgaagggaatgggtaatgatcat 930229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 14 - 139
Target Start/End: Complemental strand, 12168428 - 12168305
Alignment:
Q  14 ttctgcaaaactaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattgcaatagcttttggaaaataaattg 113  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||| |||||||||||||  ||    
T  12168428 ttctgcaaaactaaggtaagggtgagactatctctcaataatcataatctataatttctg-aaattgacctaattg-aatag-ttttggaaaataagatg 12168332  T
Q  114 agggttaggg-ttgatgatgattctga 139  Q
    |  ||||||| ||||||||||||||||    
T  12168331 aaagttagggtttgatgatgattctga 12168305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 14 - 139
Target Start/End: Complemental strand, 19287337 - 19287214
Alignment:
Q  14 ttctgcaaaactaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattgcaatagcttttggaaaataaattg 113  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||| |||||||||||||  ||    
T  19287337 ttctgcaaaactaaggtaagggtgagactatctctcaataatcataatctataatttctg-aaattgacctaattg-aatag-ttttggaaaataagatg 19287241  T
Q  114 agggttaggg-ttgatgatgattctga 139  Q
    |  ||||||| ||||||||||||||||    
T  19287240 aaagttagggtttgatgatgattctga 19287214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 14 - 139
Target Start/End: Original strand, 19785859 - 19785982
Alignment:
Q  14 ttctgcaaaactaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattgcaatagcttttggaaaataaattg 113  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| ||||| |||||||||||||| ||    
T  19785859 ttctgcaaaactaaggtaagggtgagactatctctcaataatcataatctataatttctg-aaattgacctagttg-aatag-ttttggaaaataaaatg 19785955  T
Q  114 agggttaggg-ttgatgatgattctga 139  Q
    |  ||||||| ||||||||||||||||    
T  19785956 aaagttagggtttgatgatgattctga 19785982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 14 - 139
Target Start/End: Complemental strand, 19878521 - 19878398
Alignment:
Q  14 ttctgcaaaactaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattgcaatagcttttggaaaataaattg 113  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||| |||||||||||||  ||    
T  19878521 ttctgcaaaactaaggtaagggtgagactatctctcaataatcataatctataatttctg-aaattgacctaattg-aatag-ttttggaaaataagatg 19878425  T
Q  114 agggttaggg-ttgatgatgattctga 139  Q
    |  ||||||| ||||||||||||||||    
T  19878424 aaagttagggtttgatgatgattctga 19878398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 14 - 139
Target Start/End: Complemental strand, 19884297 - 19884174
Alignment:
Q  14 ttctgcaaaactaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattgcaatagcttttggaaaataaattg 113  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||| |||||||||||||  ||    
T  19884297 ttctgcaaaactaaggttagggtgagactatctctcaataatcataatctataatttctg-aaattgacctaattg-aatag-ttttggaaaataagatg 19884201  T
Q  114 agggttaggg-ttgatgatgattctga 139  Q
    |  ||||||| ||||||||||||||||    
T  19884200 aaagttagggtttgatgatgattctga 19884174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 24 - 109
Target Start/End: Original strand, 34639986 - 34640069
Alignment:
Q  24 ctaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattgcaatagcttttggaaaataa 109  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| |||||||||||||    
T  34639986 ctaaggtaagggtgagactatctctcaataatcttaatctataatttctgaaaattgacctaattg-aatag-ttttggaaaataa 34640069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 24 - 89
Target Start/End: Original strand, 34646660 - 34646725
Alignment:
Q  24 ctaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattg 89  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  34646660 ctaaggtaagggtgagactatctctcaataatcttaatctataatttctgaaaattgacctaattg 34646725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 27 - 216
Target Start/End: Original strand, 21565214 - 21565402
Alignment:
Q  27 aggtaagggtgagactatctctcaataatc-ataatctataatttctgaaaattgacctaattgcaatagcttttggaaaataaattgagggttagggtt 125  Q
    |||||||||||||||||||||||| ||||  ||||| | ||||||| ||||||||||||||||||   | |||  ||| ||  |||||||||||||||||    
T  21565214 aggtaagggtgagactatctctcattaatagataatatttaatttcggaaaattgacctaattgcttaaccttgaggataa--aattgagggttagggtt 21565311  T
Q  126 -gatgatgattctgacgggaaatggtaatggtcatgttaattctgtttgtaatgtgatgtccagaatgaaaacttaacctatgttgttgctg 216  Q
     |||||||||||| | |||||  ||||||| ||||||||||| || ||||||||||| || | |||||||| ||||| ||||  ||||||||    
T  21565312 tgatgatgattctaaggggaatgggtaatgatcatgttaattatg-ttgtaatgtgacgttcggaatgaaatcttaatctatactgttgctg 21565402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 14 - 80
Target Start/End: Original strand, 24512833 - 24512899
Alignment:
Q  14 ttctgcaaaactaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattg 80  Q
    ||||||||| ||||||| |||||||||||||||||||||||||||| | ||||||||||||||||||    
T  24512833 ttctgcaaatctaaggtgagggtgagactatctctcaataatcatagtatataatttctgaaaattg 24512899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 24 - 89
Target Start/End: Original strand, 25469704 - 25469767
Alignment:
Q  24 ctaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattg 89  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||    
T  25469704 ctaaggtaagggtgagactatctctcaataatcataatctataa-ttctg-aaattgacctaattg 25469767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 25 - 77
Target Start/End: Complemental strand, 9187550 - 9187498
Alignment:
Q  25 taaggtaagggtgagactatctctcaataatcataatctataatttctgaaaa 77  Q
    |||||||||||||||||||||||||||||||| ||||  ||||||||||||||    
T  9187550 taaggtaagggtgagactatctctcaataatcttaatacataatttctgaaaa 9187498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 25 - 81
Target Start/End: Complemental strand, 25348542 - 25348486
Alignment:
Q  25 taaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattga 81  Q
    ||||||||||||||||||||||||||||||| ||| | || ||||||||||||||||    
T  25348542 taaggtaagggtgagactatctctcaataataatagtatagaatttctgaaaattga 25348486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 27 - 81
Target Start/End: Complemental strand, 25598697 - 25598643
Alignment:
Q  27 aggtaagggtgagactatctctcaataatcataatctataatttctgaaaattga 81  Q
    ||||||||||||||||| |||||||| |||||||| |||| ||||||||||||||    
T  25598697 aggtaagggtgagactaactctcaatgatcataatatatattttctgaaaattga 25598643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 25 - 81
Target Start/End: Complemental strand, 25397228 - 25397172
Alignment:
Q  25 taaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattga 81  Q
    ||||||||||||||| ||| ||||| || |||||||| |||||||||||||||||||    
T  25397228 taaggtaagggtgaggctaactctcgatgatcataatatataatttctgaaaattga 25397172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 24 - 89
Target Start/End: Complemental strand, 31252478 - 31252413
Alignment:
Q  24 ctaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattg 89  Q
    ||||||||||||||||| ||||| | ||| || ||||| ||||||||||||||||| | |||||||    
T  31252478 ctaaggtaagggtgagattatcttttaatgattataatatataatttctgaaaattaatctaattg 31252413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 25 - 81
Target Start/End: Original strand, 19471335 - 19471391
Alignment:
Q  25 taaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattga 81  Q
    ||||||||||||||| ||| ||||| || |||||||| ||||||||||| |||||||    
T  19471335 taaggtaagggtgaggctacctctcgatgatcataatatataatttctggaaattga 19471391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 27 - 81
Target Start/End: Original strand, 2286769 - 2286823
Alignment:
Q  27 aggtaagggtgagactatctctcaataatcataatctataatttctgaaaattga 81  Q
    ||||||||||||||||| |||||||| ||  |||| ||||| |||||||||||||    
T  2286769 aggtaagggtgagactaactctcaatgattgtaatatataacttctgaaaattga 2286823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 25 - 59
Target Start/End: Complemental strand, 18659484 - 18659450
Alignment:
Q  25 taaggtaagggtgagactatctctcaataatcata 59  Q
    ||||||||||||||||||| |||||||||||||||    
T  18659484 taaggtaagggtgagactaactctcaataatcata 18659450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 25 - 59
Target Start/End: Complemental strand, 24441707 - 24441673
Alignment:
Q  25 taaggtaagggtgagactatctctcaataatcata 59  Q
    ||||||||||||||||||| |||||||||||||||    
T  24441707 taaggtaagggtgagactaactctcaataatcata 24441673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 77
Target Start/End: Original strand, 11288668 - 11288721
Alignment:
Q  24 ctaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaa 77  Q
    |||||||||||||| || ||||| ||||| ||| |||| |||||||||||||||    
T  11288668 ctaaggtaagggtgggattatctttcaatgatcttaatatataatttctgaaaa 11288721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 77
Target Start/End: Complemental strand, 15458545 - 15458492
Alignment:
Q  24 ctaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaa 77  Q
    |||||||||||||| || ||||| ||||| || ||||| |||||||||||||||    
T  15458545 ctaaggtaagggtgggattatctttcaatgattataatatataatttctgaaaa 15458492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 77
Target Start/End: Complemental strand, 15465140 - 15465087
Alignment:
Q  24 ctaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaa 77  Q
    |||||||||||||| || ||||| ||||| || ||||| |||||||||||||||    
T  15465140 ctaaggtaagggtgggattatctttcaatgattataatatataatttctgaaaa 15465087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 24 - 52
Target Start/End: Original strand, 28288509 - 28288537
Alignment:
Q  24 ctaaggtaagggtgagactatctctcaat 52  Q
    |||||||||||||||||||||||||||||    
T  28288509 ctaaggtaagggtgagactatctctcaat 28288537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 59
Target Start/End: Original strand, 29415551 - 29415591
Alignment:
Q  19 caaaactaaggtaagggtgagactatctctcaataatcata 59  Q
    ||||||||||||||| ||||| ||| |||||||||||||||    
T  29415551 caaaactaaggtaagagtgaggctaactctcaataatcata 29415591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 114; Significance: 8e-58; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 14 - 194
Target Start/End: Complemental strand, 26583892 - 26583715
Alignment:
Q  14 ttctgcaaaactaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattgcaatagcttttggaaaataaattg 113  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||| |||||||||||||||||    
T  26583892 ttctgcaaaactaaggtaagggtgagactatctctcaataatcataatctataatttctg-aaattgacctaattgc-atag-ttttggaaaataaattg 26583796  T
Q  114 agggttaggg-ttgatgatgattctgacgggaaatggtaatggtcatgttaattctgtttgtaatgtgatgtccagaatgaa 194  Q
    |||||||||| |||||||||||||||| |||||| ||||||| ||||||||| | || |||||| ||||||| |||||||||    
T  26583795 agggttagggcttgatgatgattctgaggggaaagggtaatgatcatgttaaatatg-ttgtaaagtgatgttcagaatgaa 26583715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 25 - 206
Target Start/End: Complemental strand, 6483772 - 6483593
Alignment:
Q  25 taaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattgcaatagcttttggaaaataaattgagggttaggg- 123  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||     
T  6483772 taaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattgc-atag-ttttggaaaataaattgagggttagggt 6483675  T
Q  124 ttgatgatgattctgacgggaaatggtaatggtcatgttaattctgtttgtaatgtgatgtccagaatgaaaacttaacctat 206  Q
    |||||||||||| ||| |||||  |||| || |||||||||||||| |||||| || ||||  ||||||||||||||| ||||    
T  6483674 ttgatgatgattttgaggggaatgggtattgatcatgttaattctg-ttgtaacgtaatgtttagaatgaaaacttaatctat 6483593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 25 - 206
Target Start/End: Complemental strand, 6487239 - 6487060
Alignment:
Q  25 taaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattgcaatagcttttggaaaataaattgagggttaggg- 123  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||     
T  6487239 taaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattgc-atag-ttttggaaaataaattgagggttagggt 6487142  T
Q  124 ttgatgatgattctgacgggaaatggtaatggtcatgttaattctgtttgtaatgtgatgtccagaatgaaaacttaacctat 206  Q
    |||||||||||| ||| |||||  |||| || |||||||||||||| |||||| || ||||  ||||||||||||||| ||||    
T  6487141 ttgatgatgattttgaggggaatgggtattgatcatgttaattctg-ttgtaacgtaatgtttagaatgaaaacttaatctat 6487060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 25 - 213
Target Start/End: Original strand, 19661454 - 19661640
Alignment:
Q  25 taaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattgcaatagcttttggaaaataaattgagggttaggg- 123  Q
    |||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||| |||| |||||||| ||||||||||||||||||     
T  19661454 taaggtaagggtgagactttctctcgataatcataatctataatttctgaaaattgacctaattgc-atag-ttttggaagataaattgagggttagggt 19661551  T
Q  124 ttgatgatgattctgacgggaaatggtaatggtcatgttaattctgtttgtaatgtgatgtccagaatgaaaacttaacctatgttgttg 213  Q
    |||||||||||||||| |||||  |||| || |||||||||||||| ||||||||| ||||  ||||||||||||||| |||| ||||||    
T  19661552 ttgatgatgattctgaggggaatgggtattgatcatgttaattctg-ttgtaatgtaatgtttagaatgaaaacttaatctatattgttg 19661640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 27 - 206
Target Start/End: Complemental strand, 23879060 - 23878883
Alignment:
Q  27 aggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattgcaatagcttttggaaaataaattgagggttagggttg 126  Q
    |||||||||||||||||||||||| |||| || || |||||||||  |||||||||||||||||   | |||  |||   ||||||||||||||||||||    
T  23879060 aggtaagggtgagactatctctcattaataattatatataatttcgaaaaattgacctaattgcttaaccttgaggat--taaattgagggttagggttg 23878963  T
Q  127 atgatgattctgacgggaa-atggtaatggtcatgttaattctgtttgtaatgtgatgtccagaatgaaaacttaacctat 206  Q
     |||||||||||| |||||   ||||||| ||||||||||| || |||||||||||||| |||||||||| ||||| ||||    
T  23878962 ttgatgattctgaggggaatggggtaatgatcatgttaattatg-ttgtaatgtgatgttcagaatgaaatcttaatctat 23878883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 24 - 139
Target Start/End: Original strand, 5706023 - 5706137
Alignment:
Q  24 ctaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattgcaatagcttttggaaaataaattgagggttaggg 123  Q
    ||||||||||||||||||||||||||| |||||||||||||||||| ||| ||||||||||||||| ||||| ||||| |||||||  |||   ||||||    
T  5706023 ctaaggtaagggtgagactatctctcattaatcataatctataattcctg-aaattgacctaattg-aatagtttttgaaaaataatatgaaaattaggg 5706120  T
Q  124 -ttgatgatgattctga 139  Q
     ||||||||||||||||    
T  5706121 tttgatgatgattctga 5706137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 27 - 216
Target Start/End: Original strand, 23089057 - 23089245
Alignment:
Q  27 aggtaagggtgagactatctctcaataatc-ataatctataatttctgaaaattgacctaattgcaatagcttttggaaaataaattgagggttagggtt 125  Q
    |||||||||||||||||||||||| ||||  ||||| | ||||||| ||||||||||||||||||   | |||  ||| ||  |||||||||||||||||    
T  23089057 aggtaagggtgagactatctctcattaatagataatatttaatttcggaaaattgacctaattgcttaaccttgaggataa--aattgagggttagggtt 23089154  T
Q  126 -gatgatgattctgacgggaaatggtaatggtcatgttaattctgtttgtaatgtgatgtccagaatgaaaacttaacctatgttgttgctg 216  Q
     |||||||||||| | |||||  ||||||| ||||||||||| || ||||||||||| || | |||||||| ||||| ||||  ||||||||    
T  23089155 tgatgatgattctaaggggaatgggtaatgatcatgttaattatg-ttgtaatgtgacgttcggaatgaaatcttaatctatactgttgctg 23089245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 25 - 206
Target Start/End: Original strand, 23101463 - 23101643
Alignment:
Q  25 taaggtaagggtgagactatctctcaataatc-ataatctataatttctgaaaattgacctaattgcaatagcttttggaaaataaattgagggttaggg 123  Q
    |||||||||||||||||||||||||| ||||  ||||| | ||||||| |||||||||||||||||    | |||  ||| ||  |||||||||||||||    
T  23101463 taaggtaagggtgagactatctctcattaatagataatatgtaatttcggaaaattgacctaattgtttaaccttgaggataa--aattgagggttaggg 23101560  T
Q  124 tt-gatgatgattctgacgggaaatggtaatggtcatgttaattctgtttgtaatgtgatgtccagaatgaaaacttaacctat 206  Q
    || |||||||||||||| |||||  ||||||| ||||||||||| || ||||||||||| || | |||||||| ||||| ||||    
T  23101561 tttgatgatgattctgaggggaatgggtaatgatcatgttaattatg-ttgtaatgtgacgttcggaatgaaatcttaatctat 23101643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 25 - 89
Target Start/End: Complemental strand, 23265197 - 23265133
Alignment:
Q  25 taaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattg 89  Q
    ||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| |||||||    
T  23265197 taaggtaagggtgagactatctctcaataatcatagtatataatttctgaaaattgatctaattg 23265133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 25 - 89
Target Start/End: Complemental strand, 23280265 - 23280201
Alignment:
Q  25 taaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattg 89  Q
    ||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| |||||||    
T  23280265 taaggtaagggtgagactatctctcaataatcatagtatataatttctgaaaattgatctaattg 23280201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 25 - 86
Target Start/End: Complemental strand, 21908414 - 21908353
Alignment:
Q  25 taaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaa 86  Q
    |||||||||||||||||||||||||||||||||| || ||||||||||||||||||| ||||    
T  21908414 taaggtaagggtgagactatctctcaataatcatgatatataatttctgaaaattgatctaa 21908353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 25 - 81
Target Start/End: Complemental strand, 24661632 - 24661576
Alignment:
Q  25 taaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattga 81  Q
    ||||||||||||||| ||| ||||| || |||||||| |||||||||||||||||||    
T  24661632 taaggtaagggtgaggctaactctcgatgatcataatatataatttctgaaaattga 24661576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 24 - 79
Target Start/End: Complemental strand, 10632 - 10577
Alignment:
Q  24 ctaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaatt 79  Q
    |||||||||||||| || ||||| |||||| ||||||| |||||||||||||||||    
T  10632 ctaaggtaagggtgggattatctttcaatagtcataatatataatttctgaaaatt 10577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 24 - 79
Target Start/End: Original strand, 25180929 - 25180984
Alignment:
Q  24 ctaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaatt 79  Q
    |||||||||||||| || ||||| |||||| ||||||| |||||||||||||||||    
T  25180929 ctaaggtaagggtgggattatctttcaatagtcataatatataatttctgaaaatt 25180984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 15 - 124
Target Start/End: Complemental strand, 26885246 - 26885139
Alignment:
Q  15 tctgcaaaactaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattgcaatagcttttggaaaataaattga 114  Q
    |||||||  |||||||||||||| || ||||| ||||||||| |||| ||||||||||||||||| | |||| || ||||| | ||||| || |||||||    
T  26885246 tctgcaattctaaggtaagggtgggattatctttcaataatc-taatgtataatttctgaaaattaatctaa-tggaatagttcttggagaaaaaattga 26885149  T
Q  115 gggttagggt 124  Q
    |  |||||||    
T  26885148 gaattagggt 26885139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 14 - 77
Target Start/End: Original strand, 23168288 - 23168351
Alignment:
Q  14 ttctgcaaaactaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaa 77  Q
    ||||||||  |||||||||||||| || ||||| ||| | |||||||| |||||||||||||||    
T  23168288 ttctgcaattctaaggtaagggtgggattatctttcattgatcataatgtataatttctgaaaa 23168351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 14 - 77
Target Start/End: Original strand, 23579545 - 23579608
Alignment:
Q  14 ttctgcaaaactaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaa 77  Q
    ||||||||  |||||||||||||| || ||||| ||| | |||||||| |||||||||||||||    
T  23579545 ttctgcaattctaaggtaagggtgggattatctttcattgatcataatgtataatttctgaaaa 23579608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0247 (Bit Score: 110; Significance: 2e-55; HSPs: 1)
Name: scaffold0247
Description:

Target: scaffold0247; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 14 - 201
Target Start/End: Complemental strand, 11407 - 11221
Alignment:
Q  14 ttctgcaaaactaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattgcaatagcttttggaaaata-aatt 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||| |||||||||||| ||||    
T  11407 ttctgcaaaactaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattgc-ttag-ttttggaaaatagaatt 11310  T
Q  113 gagggttaggg-ttgatgatgattctgacgggaaatggtaatggtcatgttaattctgtttgtaatgtgatgtccagaatgaaaacttaa 201  Q
    ||||||||||| |||||||||||||||  |||||   |||||| |||||||||||||| |||||||||||||| || ||||||| |||||    
T  11309 gagggttagggtttgatgatgattctggagggaatgagtaatgatcatgttaattctg-ttgtaatgtgatgttcaaaatgaaatcttaa 11221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0553 (Bit Score: 108; Significance: 3e-54; HSPs: 1)
Name: scaffold0553
Description:

Target: scaffold0553; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 24 - 206
Target Start/End: Original strand, 10195 - 10376
Alignment:
Q  24 ctaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattgcaatagcttttggaaaataaattgagggttaggg 123  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| |||||||| |||||||||    
T  10195 ctaaggtaagggtgggactatctctcaataatcataatctataatttctgaaaattgacctaattgc-atagtttttggaagataaattgtgggttaggg 10293  T
Q  124 -ttgatgatgattctgacgggaaatggtaatggtcatgttaattctgtttgtaatgtgatgtccagaatgaaaacttaacctat 206  Q
     |||||||||||||||| |||||  |||| || |||||||||||||| ||||||||| ||||  ||||||||||||||| ||||    
T  10294 tttgatgatgattctgaggggaatgggtattgatcatgttaattctg-ttgtaatgtaatgtttagaatgaaaacttaatctat 10376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0544 (Bit Score: 108; Significance: 3e-54; HSPs: 1)
Name: scaffold0544
Description:

Target: scaffold0544; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 24 - 206
Target Start/End: Original strand, 1525 - 1706
Alignment:
Q  24 ctaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattgcaatagcttttggaaaataaattgagggttaggg 123  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| |||||||| |||||||||    
T  1525 ctaaggtaagggtgggactatctctcaataatcataatctataatttctgaaaattgacctaattgc-atagtttttggaagataaattgtgggttaggg 1623  T
Q  124 -ttgatgatgattctgacgggaaatggtaatggtcatgttaattctgtttgtaatgtgatgtccagaatgaaaacttaacctat 206  Q
     |||||||||||||||| |||||  |||| || |||||||||||||| ||||||||| ||||  ||||||||||||||| ||||    
T  1624 tttgatgatgattctgaggggaatgggtattgatcatgttaattctg-ttgtaatgtaatgtttagaatgaaaacttaatctat 1706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 108; Significance: 3e-54; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 24 - 206
Target Start/End: Complemental strand, 44477678 - 44477498
Alignment:
Q  24 ctaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattgcaatagcttttggaaaataaattgagggttaggg 123  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||    
T  44477678 ctaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattgc-atag-ttttggaaaataaattgagggttaggg 44477581  T
Q  124 -ttgatgatgattctgacgggaaatggtaatggtcatgttaattctgtttgtaatgtgatgtccagaatgaaaacttaacctat 206  Q
     |||||||||||| ||| |||||  |||| || |||||||||||||| |||||| || ||||  ||||||||||||||| ||||    
T  44477580 tttgatgatgattttgaggggaatgggtattgatcatgttaattctg-ttgtaacgtaatgtttagaatgaaaacttaatctat 44477498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 24 - 206
Target Start/End: Complemental strand, 44492836 - 44492656
Alignment:
Q  24 ctaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattgcaatagcttttggaaaataaattgagggttaggg 123  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||    
T  44492836 ctaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattgc-atag-ttttggaaaataaattgagggttaggg 44492739  T
Q  124 -ttgatgatgattctgacgggaaatggtaatggtcatgttaattctgtttgtaatgtgatgtccagaatgaaaacttaacctat 206  Q
     |||||||||||| ||| |||||  |||| || |||||||||||||| |||||| || ||||  ||||||||||||||| ||||    
T  44492738 tttgatgatgattttgaggggaatgggtattgatcatgttaattctg-ttgtaacgtaatgtttagaatgaaaacttaatctat 44492656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 14 - 215
Target Start/End: Complemental strand, 23866680 - 23866481
Alignment:
Q  14 ttctgcaaaactaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattgcaatagcttttggaaaataaattg 113  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| |||||||||||||||| |||| |||||||||||||||||    
T  23866680 ttctgcaaaactaaggtaagggtgagactatctctcaataatcataatttataattcctg-aaattgacctaattgc-atag-ttttggaaaataaattg 23866584  T
Q  114 agggttaggg-ttgatgatgattctgacgggaaat-ggtaatggtcatgttaattctgtttgtaatgtgatgtccagaatgaaaacttaacctatgttgt 211  Q
    |||||||||| |||||||||||| ||| | ||||| ||||||| ||||||||||||| |||||||| | |||| ||||||  |||||||| || ||||||    
T  23866583 agggttagggtttgatgatgattatgaagagaaatgggtaatgatcatgttaattctatttgtaatataatgttcagaatataaacttaatct-tgttgt 23866485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 27 - 206
Target Start/End: Original strand, 8727735 - 8727913
Alignment:
Q  27 aggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattgcaatagcttttggaaaataaattgagggttaggg-tt 125  Q
    |||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| |||||||||||||||||| ||    
T  8727735 aggtaagggtgagattatccctcaataatcataatctataatttctgaaaattgacctaattgc-atagtttttggaagataaattgagggttagggttt 8727833  T
Q  126 gatgatgattctgacgggaaatggtaatggtcatgttaattctgtttgtaatgtgatgtccagaatgaaaacttaacctat 206  Q
    || ||||||||||| ||| |  |||| || |||||||||||||| ||||||||| |||| |||||||||||||||| ||||    
T  8727834 gacgatgattctgaggggtatgggtattgatcatgttaattctg-ttgtaatgtaatgttcagaatgaaaacttaatctat 8727913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 14 - 139
Target Start/End: Complemental strand, 17054656 - 17054533
Alignment:
Q  14 ttctgcaaaactaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattgcaatagcttttggaaaataaattg 113  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| ||||| |||||||||||||  ||    
T  17054656 ttctgcaaaaccaaggtaagggtgagactatctctcaataatcataatctataattcctg-aaattgacctaattg-aatag-ttttggaaaataagatg 17054560  T
Q  114 agggttaggg-ttgatgatgattctga 139  Q
    |  ||||||| ||||||||||||||||    
T  17054559 aaagttagggtttgatgatgattctga 17054533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 25 - 89
Target Start/End: Original strand, 23482053 - 23482117
Alignment:
Q  25 taaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattg 89  Q
    ||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| |||||||    
T  23482053 taaggtaagggtgagactatctctcaataatcatagtatataatttctgaaaattgatctaattg 23482117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 25 - 81
Target Start/End: Complemental strand, 18614327 - 18614271
Alignment:
Q  25 taaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattga 81  Q
    |||||||||||||||||||||||||||||||||| || |||||||||||||||||||    
T  18614327 taaggtaagggtgagactatctctcaataatcatgatatataatttctgaaaattga 18614271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 13 - 206
Target Start/End: Original strand, 27940840 - 27941034
Alignment:
Q  13 attctgcaaaactaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattgcaatagcttttggaaaataa--a 110  Q
    ||||||||||||||||||||||||||| ||| |  ||||| || ||||| ||| ||||||||||||||   | |||  ||| | | ||| |||||||  |    
T  27940840 attctgcaaaactaaggtaagggtgaggctaaccttcaatgattataatatatgatttctgaaaattgtt-tgattagaattgttcttgaaaaataagaa 27940938  T
Q  111 ttgagggttagggtt-gatgatgattctgacgggaaatggtaatggtcatgttaattctgtttgtaatgtgatgtccagaatgaaaacttaacctat 206  Q
    ||| |  |||||||| |||||||||||||| |||||  |||| || |||||||||||||| ||||||||| |||| ||||||||||| |||| ||||    
T  27940939 ttgggaattagggtttgatgatgattctgaggggaatgggtattgatcatgttaattctg-ttgtaatgtaatgttcagaatgaaaatttaatctat 27941034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 14 - 80
Target Start/End: Original strand, 14056553 - 14056619
Alignment:
Q  14 ttctgcaaaactaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattg 80  Q
    ||||||||| |||||||||||||||||||||||||||||||| ||| | | ||| ||||||||||||    
T  14056553 ttctgcaaatctaaggtaagggtgagactatctctcaataataatagtatgtaaattctgaaaattg 14056619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 25 - 81
Target Start/End: Complemental strand, 39364975 - 39364919
Alignment:
Q  25 taaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattga 81  Q
    ||||||||||||||||||||||||||||||| ||| | || ||||||||||||||||    
T  39364975 taaggtaagggtgagactatctctcaataataatagtatagaatttctgaaaattga 39364919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 14 - 80
Target Start/End: Complemental strand, 25112042 - 25111976
Alignment:
Q  14 ttctgcaaaactaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattg 80  Q
    |||| |||| |||||||||||||||||||||||||||||||| ||| | | ||| ||||||||||||    
T  25112042 ttctacaaatctaaggtaagggtgagactatctctcaataataatagtatgtaaattctgaaaattg 25111976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 25 - 79
Target Start/End: Original strand, 29643386 - 29643440
Alignment:
Q  25 taaggtaagggtgagactatctctcaataatcataatctataatttctgaaaatt 79  Q
    |||||||||||||||| ||||| |||||||||||||| | |||||||||||||||    
T  29643386 taaggtaagggtgagattatctttcaataatcataatatgtaatttctgaaaatt 29643440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 24 - 79
Target Start/End: Original strand, 24320670 - 24320725
Alignment:
Q  24 ctaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaatt 79  Q
    |||||||||||||| || ||||| |||||| ||||||| |||||||||||||||||    
T  24320670 ctaaggtaagggtgggattatctttcaatagtcataatatataatttctgaaaatt 24320725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 25 - 81
Target Start/End: Complemental strand, 21931752 - 21931696
Alignment:
Q  25 taaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattga 81  Q
    ||||||||||||||| ||| |||||||| || ||||| ||||| |||||||||||||    
T  21931752 taaggtaagggtgaggctaactctcaatgattataatatataacttctgaaaattga 21931696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 11 - 51
Target Start/End: Original strand, 23646710 - 23646750
Alignment:
Q  11 ttattctgcaaaactaaggtaagggtgagactatctctcaa 51  Q
    ||||| ||||||| ||||| |||||||||||||||||||||    
T  23646710 ttattttgcaaaattaaggcaagggtgagactatctctcaa 23646750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1773 (Bit Score: 106; Significance: 5e-53; HSPs: 1)
Name: scaffold1773
Description:

Target: scaffold1773; HSP #1
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 17 - 216
Target Start/End: Complemental strand, 1240 - 1044
Alignment:
Q  17 tgcaaaactaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattgcaatagcttttggaaaataaattgagg 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||| |||| ||||||||||||||||||||    
T  1240 tgcaaaactaaggtaagggtgagactatctctcaataatcataatctataattcctg-aaattgacctaattgc-atag-ttttggaaaataaattgagg 1144  T
Q  117 gttaggg-ttgatgatgattctgacgggaaat-ggtaatggtcatgttaattctgtttgtaatgtgatgtccagaatgaaaacttaacctatgttgttgc 214  Q
    ||||||| ||||||| |||| ||| ||||||| ||||||| |||||||||||||  ||||||| | |||| |||||||||||||||| || |||||||||    
T  1143 gttagggtttgatgaggattatgaagggaaatgggtaatgatcatgttaattct-cttgtaatataatgttcagaatgaaaacttaatct-tgttgttgc 1046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0924 (Bit Score: 106; Significance: 5e-53; HSPs: 1)
Name: scaffold0924
Description:

Target: scaffold0924; HSP #1
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 14 - 165
Target Start/End: Original strand, 740 - 892
Alignment:
Q  14 ttctgcaaaactaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattgcaatagcttttggaaaataaattg 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||    
T  740 ttctgcaaaactaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattgc-atagtttttggaaaataaattg 838  T
Q  114 agggttaggg-ttgatgatgattctgacgggaaat-ggtaatggtcatgttaat 165  Q
    |||||||||| ||||||| |||| ||| ||||||| ||||||| ||||| ||||    
T  839 agggttagggtttgatgaggattatgaagggaaatgggtaatgatcatgataat 892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 106; Significance: 5e-53; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 17 - 216
Target Start/End: Complemental strand, 50241 - 50045
Alignment:
Q  17 tgcaaaactaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattgcaatagcttttggaaaataaattgagg 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||| |||| ||||||||||||||||||||    
T  50241 tgcaaaactaaggtaagggtgagactatctctcaataatcataatctataattcctg-aaattgacctaattgc-atag-ttttggaaaataaattgagg 50145  T
Q  117 gttaggg-ttgatgatgattctgacgggaaat-ggtaatggtcatgttaattctgtttgtaatgtgatgtccagaatgaaaacttaacctatgttgttgc 214  Q
    ||||||| ||||||| |||| ||| ||||||| ||||||| |||||||||||||  ||||||| | |||| |||||||||||||||| || |||||||||    
T  50144 gttagggtttgatgaggattatgaagggaaatgggtaatgatcatgttaattct-cttgtaatataatgttcagaatgaaaacttaatct-tgttgttgc 50047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0058 (Bit Score: 102; Significance: 1e-50; HSPs: 1)
Name: scaffold0058
Description:

Target: scaffold0058; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 14 - 166
Target Start/End: Complemental strand, 356 - 206
Alignment:
Q  14 ttctgcaaaactaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattgcaatagcttttggaaaataaattg 113  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||| |||| |||||||||||||||||    
T  356 ttctgcaaaactaaggtaagggtgagactatctctcaataaccataatctataatttctg-aaattgacctaattgc-atag-ttttggaaaataaattg 260  T
Q  114 agggttaggg-ttgatgatgattctgacgggaaatggtaatggtcatgttaatt 166  Q
    |||||||||| |||||||||||||||| |||||  ||||||| |||||||||||    
T  259 agggttagggtttgatgatgattctgaggggaatgggtaatgatcatgttaatt 206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 97; Significance: 1e-47; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 14 - 216
Target Start/End: Original strand, 8045822 - 8046022
Alignment:
Q  14 ttctgcaaaactaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattgcaatagcttttggaaaataaattg 113  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||| |||| |||||||||||||||||    
T  8045822 ttctgcaaaactaaggtaagggtgagactatctctcgataatcataatctataatttctg-aaattgacctaattgc-atag-ttttggaaaataaattg 8045918  T
Q  114 agggttaggg-ttgatgatgattctgacgggaaat-ggtaatggtcatgttaattctgtttgtaatgtgatgtccagaatgaaaacttaacctatgttgt 211  Q
    |||||||||| |||| ||  ||||||| ||||||| ||||| | | |||||||||||  ||||||| | |||| |||||||||||||||| |  ||||||    
T  8045919 agggttagggtttgacgagaattctgaagggaaatgggtaaagataatgttaattct-cttgtaatataatgttcagaatgaaaacttaatccttgttgt 8046017  T
Q  212 tgctg 216  Q
    |||||    
T  8046018 tgctg 8046022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 14 - 216
Target Start/End: Complemental strand, 11848179 - 11847972
Alignment:
Q  14 ttctgcaaaactaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattgcaatagcttttg------gaaaat 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| | || |||| |||||       |||||    
T  11848179 ttctgcaaaactaaggtaagggtgagactatctctcaataatcataatctataattcctgaaaattgacctagtggc-atag-ttttgaaaaattaaaat 11848082  T
Q  108 aaattgagggttaggg-ttgatgatgattctgacg-ggaaatggtaatggtcatgttaattctgtttgtaatgtgatgtccagaatgaaaacttaaccta 205  Q
     ||||||||||||||| ||||||| |||||||| | ||||  ||||||| |||||||||| || ||| |||| | |||| |||||||||||||||| ||     
T  11848081 caattgagggttagggtttgatgacgattctgaagaggaatgggtaatgatcatgttaatcct-tttataatataatgttcagaatgaaaacttaatctt 11847983  T
Q  206 tgttgttgctg 216  Q
    |||||||||||    
T  11847982 tgttgttgctg 11847972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 24 - 139
Target Start/End: Complemental strand, 53483760 - 53483646
Alignment:
Q  24 ctaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattgcaatagcttttggaaaataaattgagggttaggg 123  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| ||||| ||||| |||||||  |||   ||||||    
T  53483760 ctaaggtaagggtgagactatctctcaataatcataatctataattcctg-aaattgacctaattg-aatagtttttgaaaaataatatgaaaattaggg 53483663  T
Q  124 -ttgatgatgattctga 139  Q
     ||||||||||||||||    
T  53483662 tttgatgatgattctga 53483646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 14 - 80
Target Start/End: Complemental strand, 15408205 - 15408139
Alignment:
Q  14 ttctgcaaaactaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattg 80  Q
    ||||||| | |||||||||||||||||||||||||||||||||||| | ||||||||||||||||||    
T  15408205 ttctgcagatctaaggtaagggtgagactatctctcaataatcatagtatataatttctgaaaattg 15408139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 25 - 81
Target Start/End: Complemental strand, 8834951 - 8834895
Alignment:
Q  25 taaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattga 81  Q
    ||||||||||||||| ||| |||||||| |||||||| |||||||||||||||||||    
T  8834951 taaggtaagggtgaggctaactctcaatgatcataatatataatttctgaaaattga 8834895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 25 - 81
Target Start/End: Complemental strand, 13888697 - 13888641
Alignment:
Q  25 taaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattga 81  Q
    ||||||||||||||| ||| |||||||| |||||||| |||||||||||||||||||    
T  13888697 taaggtaagggtgaggctaactctcaatgatcataatgtataatttctgaaaattga 13888641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 27 - 79
Target Start/End: Complemental strand, 14486713 - 14486661
Alignment:
Q  27 aggtaagggtgagactatctctcaataatcataatctataatttctgaaaatt 79  Q
    |||||||||||||||||||  ||||| |||||||| |||||||||||||||||    
T  14486713 aggtaagggtgagactatccttcaatgatcataatatataatttctgaaaatt 14486661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 25 - 81
Target Start/End: Complemental strand, 15245271 - 15245215
Alignment:
Q  25 taaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattga 81  Q
    ||||||||||||||| ||| |||||||| ||| |||| |||||||||||||||||||    
T  15245271 taaggtaagggtgaggctaactctcaatgatcgtaatatataatttctgaaaattga 15245215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 30 - 81
Target Start/End: Original strand, 22724691 - 22724742
Alignment:
Q  30 taagggtgagactatctctcaataatcataatctataatttctgaaaattga 81  Q
    |||||||||||||||||||||||||| ||| | || ||||||||||||||||    
T  22724691 taagggtgagactatctctcaataataatagtatagaatttctgaaaattga 22724742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 19 - 60
Target Start/End: Original strand, 15747551 - 15747592
Alignment:
Q  19 caaaactaaggtaagggtgagactatctctcaataatcataa 60  Q
    ||||||||||||||||||||||||| ||||||||||| ||||    
T  15747551 caaaactaaggtaagggtgagactaactctcaataattataa 15747592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 25 - 81
Target Start/End: Complemental strand, 15308176 - 15308120
Alignment:
Q  25 taaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattga 81  Q
    |||| |||||||||| ||| |||||||| ||| |||| |||||||||||||||||||    
T  15308176 taagttaagggtgaggctaactctcaatgatcgtaatatataatttctgaaaattga 15308120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 24 - 79
Target Start/End: Original strand, 16146830 - 16146885
Alignment:
Q  24 ctaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaatt 79  Q
    |||||||||||||| || ||||| |||||| ||||||| | |||||||||||||||    
T  16146830 ctaaggtaagggtgggattatctttcaatagtcataatatgtaatttctgaaaatt 16146885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 24 - 79
Target Start/End: Complemental strand, 27906321 - 27906266
Alignment:
Q  24 ctaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaatt 79  Q
    ||||| |||||||| || ||||| ||||| |||||||| |||||||||||||||||    
T  27906321 ctaagataagggtgggattatctttcaatgatcataatgtataatttctgaaaatt 27906266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 25 - 55
Target Start/End: Complemental strand, 15069811 - 15069781
Alignment:
Q  25 taaggtaagggtgagactatctctcaataat 55  Q
    |||||||||||||||||||||||||||||||    
T  15069811 taaggtaagggtgagactatctctcaataat 15069781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 25 - 55
Target Start/End: Complemental strand, 15076411 - 15076381
Alignment:
Q  25 taaggtaagggtgagactatctctcaataat 55  Q
    |||||||||||||||||||||||||||||||    
T  15076411 taaggtaagggtgagactatctctcaataat 15076381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 81
Target Start/End: Complemental strand, 14912138 - 14912081
Alignment:
Q  24 ctaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattga 81  Q
    ||||||||||||| |||||| |||||||| ||  |||| ||||| |||||||||||||    
T  14912138 ctaaggtaagggttagactaactctcaatgattgtaatatataacttctgaaaattga 14912081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0117 (Bit Score: 89; Significance: 6e-43; HSPs: 2)
Name: scaffold0117
Description:

Target: scaffold0117; HSP #1
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 14 - 216
Target Start/End: Original strand, 1887 - 2087
Alignment:
Q  14 ttctgcaaaactaaggtaagggtgagactatctctcaataatcataatctataatttctg-aaaattgacctaattgcaatagcttttggaaaataaatt 112  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||  |||| ||||||||||||| ||    
T  1887 ttctgcaaaactaaggtaagggtgagactatatctcaataatcataatctataatttctgaaaaattgacctaattg-tatag-ttttggaaaataattt 1984  T
Q  113 gagggttaggg-ttgatgatgattctgacgggaaatggtaatggtcatgttaattctgtttgtaatgtgatgtccagaatgaaaacttaacctatgttgt 211  Q
    ||||||||||| |||||||||||| |||  ||||  ||||||| | |||||||||||  ||||||| | |||| || ||||||||||||| |  ||||||    
T  1985 gagggttagggtttgatgatgattttga-tggaatgggtaatgattatgttaattct-cttgtaatttaatgttcataatgaaaacttaatccttgttgt 2082  T
Q  212 tgctg 216  Q
    |||||    
T  2083 tgctg 2087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0117; HSP #2
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 14 - 216
Target Start/End: Original strand, 8564 - 8764
Alignment:
Q  14 ttctgcaaaactaaggtaagggtgagactatctctcaataatcataatctataatttctg-aaaattgacctaattgcaatagcttttggaaaataaatt 112  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||  |||| ||||||||||||| ||    
T  8564 ttctgcaaaactaaggtaagggtgagactatatctcaataatcataatctataatttctgaaaaattgacctaattg-tatag-ttttggaaaataattt 8661  T
Q  113 gagggttaggg-ttgatgatgattctgacgggaaatggtaatggtcatgttaattctgtttgtaatgtgatgtccagaatgaaaacttaacctatgttgt 211  Q
    ||||||||||| |||||||||||| |||  ||||  ||||||| | |||||||||||  ||||||| | |||| || ||||||||||||| |  ||||||    
T  8662 gagggttagggtttgatgatgattatga-tggaatgggtaatgattatgttaattct-cttgtaatttaatgttcaaaatgaaaacttaatccttgttgt 8759  T
Q  212 tgctg 216  Q
    |||||    
T  8760 tgctg 8764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0154 (Bit Score: 84; Significance: 6e-40; HSPs: 1)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 14 - 194
Target Start/End: Complemental strand, 30923 - 30743
Alignment:
Q  14 ttctgcaaaactaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattgcaatagcttttggaaaat-aaatt 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||  | |||||    
T  30923 ttctgcaaaactaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattgc-atag-ttttggaaggtaaaatt 30826  T
Q  113 gagggttaggg-ttgatgatgattctgacgggaaatg-gtaatggtcatgttaattctgtttgtaatgtgatgtccagaatgaa 194  Q
    |||| |||||| |||||||||||| ||| |||||  | |||| | ||||||||| | || |||||| ||||||| |||||||||    
T  30825 gaggattagggtttgatgatgattttgaggggaatggtgtaacgatcatgttaaatatg-ttgtaaagtgatgtgcagaatgaa 30743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0796 (Bit Score: 70; Significance: 1e-31; HSPs: 2)
Name: scaffold0796
Description:

Target: scaffold0796; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 19 - 139
Target Start/End: Original strand, 1727 - 1845
Alignment:
Q  19 caaaactaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattgcaatagcttttggaaaataaattgagggt 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| ||||| |||||||||||||  |||  ||    
T  1727 caaaactaaggtaagggtgagactatctctcaataatcataatctataattcctg-aaattgacctaattg-aatag-ttttggaaaataatatgaaagt 1823  T
Q  119 taggg-ttgatgatgattctga 139  Q
    ||||| ||||||||||||||||    
T  1824 tagggtttgatgatgattctga 1845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0796; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 19 - 139
Target Start/End: Original strand, 5750 - 5868
Alignment:
Q  19 caaaactaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattgcaatagcttttggaaaataaattgagggt 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| ||||| |||||||||||||  |||  ||    
T  5750 caaaactaaggtaagggtgagactatctctcaataatcataatctataattcctg-aaattgacctaattg-aatag-ttttggaaaataatatgaaagt 5846  T
Q  119 taggg-ttgatgatgattctga 139  Q
    ||||| ||||||||||||||||    
T  5847 tagggtttgatgatgattctga 5868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0456 (Bit Score: 68; Significance: 2e-30; HSPs: 4)
Name: scaffold0456
Description:

Target: scaffold0456; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 20 - 91
Target Start/End: Complemental strand, 991 - 920
Alignment:
Q  20 aaaactaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattgca 91  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  991 aaaactaaggtaagggtgagactatctctcaataatcataatctatagtttctgaaaattgacctaattgca 920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0456; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 20 - 91
Target Start/End: Complemental strand, 8136 - 8065
Alignment:
Q  20 aaaactaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattgca 91  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  8136 aaaactaaggtaagggtgagactatctctcaataatcataatctatagtttctgaaaattgacctaattgca 8065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0456; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 171 - 216
Target Start/End: Complemental strand, 899 - 854
Alignment:
Q  171 ttgtaatgtgatgtccagaatgaaaacttaacctatgttgttgctg 216  Q
    |||||||||||||| |||||||||||||||| || |||||||||||    
T  899 ttgtaatgtgatgttcagaatgaaaacttaatctgtgttgttgctg 854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0456; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 171 - 216
Target Start/End: Complemental strand, 8044 - 7999
Alignment:
Q  171 ttgtaatgtgatgtccagaatgaaaacttaacctatgttgttgctg 216  Q
    |||||||||||||| |||||||||||||||| || |||||||||||    
T  8044 ttgtaatgtgatgttcagaatgaaaacttaatctgtgttgttgctg 7999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0476 (Bit Score: 62; Significance: 8e-27; HSPs: 1)
Name: scaffold0476
Description:

Target: scaffold0476; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 27 - 216
Target Start/End: Original strand, 3295 - 3484
Alignment:
Q  27 aggtaagggtgagactatctctcaataatc-ataatctataatttctgaaaattgacctaattgcaatagcttttggaaaataaattgagggttagggtt 125  Q
    |||||||||||||||||||||||| ||||  ||||| | ||||||| ||||||||||||||||||   | |||  ||| ||  |||||||||||||||||    
T  3295 aggtaagggtgagactatctctcattaatagataatatgtaatttcggaaaattgacctaattgcttaaccttggggataa--aattgagggttagggtt 3392  T
Q  126 -gatgatgattctgacgggaaatggtaatgg-tcatgttaattctgtttgtaatgtgatgtccagaatgaaaacttaacctatgttgttgctg 216  Q
     |||||||||||||| |||||  |||||||  ||||||||||| |||| |||||||||||| |||||||||| ||||| ||||  ||||||||    
T  3393 tgatgatgattctgaggggaatgggtaatgaatcatgttaattttgtt-gtaatgtgatgttcagaatgaaatcttaatctatactgttgctg 3484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0129 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 18 - 137
Target Start/End: Original strand, 45268 - 45386
Alignment:
Q  18 gcaaaactaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattgcaatagcttttggaaaataaattgaggg 117  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| ||||| ||||| |||||||  |||       
T  45268 gcaaatctaaggtaagggtgagactatctctcaataatcataatctataattcctg-aaattgacctaattg-aatagtttttgaaaaataatatgaaaa 45365  T
Q  118 ttaggg-ttgatgatgattct 137  Q
    |||||| ||||||||||||||    
T  45366 ttagggtttgatgatgattct 45386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0077 (Bit Score: 59; Significance: 5e-25; HSPs: 1)
Name: scaffold0077
Description:

Target: scaffold0077; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 27 - 206
Target Start/End: Original strand, 3624 - 3802
Alignment:
Q  27 aggtaagggtgagactatctctcaataatc-ataatctataatttctgaaaattgacctaattgcaatagcttttggaaaataaattgagggttagggtt 125  Q
    |||||||||||||||||||||||| ||||  ||||| | ||||||| ||||||||||||||||||   | |||  ||| ||  |||||||||||||||||    
T  3624 aggtaagggtgagactatctctcattaatagataatatgtaatttcggaaaattgacctaattgcttaaccttgaggataa--aattgagggttagggtt 3721  T
Q  126 -gatgatgattctgacgggaaatggtaatggtcatgttaattctgtttgtaatgtgatgtccagaatgaaaacttaacctat 206  Q
     |||||||||||||| ||| |  ||||||| ||||||||||| || |||||||||||||| | |||||||| ||||| ||||    
T  3722 tgatgatgattctgagggggatgggtaatgatcatgttaattatg-ttgtaatgtgatgttcggaatgaaatcttaatctat 3802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0107 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: scaffold0107
Description:

Target: scaffold0107; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 14 - 80
Target Start/End: Original strand, 40521 - 40587
Alignment:
Q  14 ttctgcaaaactaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattg 80  Q
    ||||||||| |||||||||||||||||||||||||||||||||||| | ||||||||||||||||||    
T  40521 ttctgcaaatctaaggtaagggtgagactatctctcaataatcatagtatataatttctgaaaattg 40587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0222 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0222
Description:

Target: scaffold0222; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 25 - 89
Target Start/End: Complemental strand, 16875 - 16811
Alignment:
Q  25 taaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattg 89  Q
    ||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| |||||||    
T  16875 taaggtaagggtgagactatctctcaataatcatagtatataatttctgaaaattgatctaattg 16811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 25 - 89
Target Start/End: Complemental strand, 116951 - 116887
Alignment:
Q  25 taaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattg 89  Q
    ||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| |||||||    
T  116951 taaggtaagggtgagactatctctcaataatcatagtatataatttctgaaaattgatctaattg 116887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 59
Target Start/End: Complemental strand, 60474 - 60441
Alignment:
Q  26 aaggtaagggtgagactatctctcaataatcata 59  Q
    |||||||||||||||||| |||||||||||||||    
T  60474 aaggtaagggtgagactaactctcaataatcata 60441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0310 (Bit Score: 52; Significance: 8e-21; HSPs: 1)
Name: scaffold0310
Description:

Target: scaffold0310; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 14 - 80
Target Start/End: Complemental strand, 17710 - 17643
Alignment:
Q  14 ttctgcaaaa-ctaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattg 80  Q
    |||||||||| ||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||    
T  17710 ttctgcaaaatctaaggtaagggtgagactatctctcaataaccataatgtataatttctgaaaattg 17643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 14 - 80
Target Start/End: Complemental strand, 135539 - 135473
Alignment:
Q  14 ttctgcaaaactaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattg 80  Q
    ||||| ||| |||||||||||||||||||||||||||||||||||| | ||||||||||||||||||    
T  135539 ttctgaaaatctaaggtaagggtgagactatctctcaataatcatagtatataatttctgaaaattg 135473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0461 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: scaffold0461
Description:

Target: scaffold0461; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 25 - 89
Target Start/End: Original strand, 8 - 72
Alignment:
Q  25 taaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattg 89  Q
    |||||||||||||||||||||||||||||||| ||||  |||||||||||||||||| |||||||    
T  8 taaggtaagggtgagactatctctcaataatcttaatacataatttctgaaaattgatctaattg 72  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0235 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: scaffold0235
Description:

Target: scaffold0235; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 14 - 78
Target Start/End: Original strand, 22582 - 22646
Alignment:
Q  14 ttctgcaaaactaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaat 78  Q
    ||||||||| | |||||||||||||||||||||||||||||||||| | ||||||||||||||||    
T  22582 ttctgcaaatccaaggtaagggtgagactatctctcaataatcatagtatataatttctgaaaat 22646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0146 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: scaffold0146
Description:

Target: scaffold0146; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 25 - 89
Target Start/End: Complemental strand, 13687 - 13623
Alignment:
Q  25 taaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattg 89  Q
    |||||||||||||||||||||||||||||||| ||||  |||||||||||||||||| |||||||    
T  13687 taaggtaagggtgagactatctctcaataatcttaatacataatttctgaaaattgatctaattg 13623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 25 - 89
Target Start/End: Original strand, 101928 - 101992
Alignment:
Q  25 taaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattg 89  Q
    ||||||||||||||||||||||||||||||||||| | ||||||| ||||||||||| |||||||    
T  101928 taaggtaagggtgagactatctctcaataatcatagtatataattcctgaaaattgatctaattg 101992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0124 (Bit Score: 44; Significance: 5e-16; HSPs: 2)
Name: scaffold0124
Description:

Target: scaffold0124; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 25 - 80
Target Start/End: Original strand, 34276 - 34331
Alignment:
Q  25 taaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattg 80  Q
    ||||||||||||||||||||||||| ||||||||| | ||||||||||||||||||    
T  34276 taaggtaagggtgagactatctctcgataatcatagtatataatttctgaaaattg 34331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0124; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 81
Target Start/End: Original strand, 35438 - 35495
Alignment:
Q  24 ctaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattga 81  Q
    ||||||||||||| |||||| |||||||| ||  |||| ||||| |||||||||||||    
T  35438 ctaaggtaagggtaagactaactctcaatgattgtaatgtataacttctgaaaattga 35495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0815 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0815
Description:

Target: scaffold0815; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 14 - 76
Target Start/End: Complemental strand, 1515 - 1453
Alignment:
Q  14 ttctgcaaaactaaggtaagggtgagactatctctcaataatcataatctataatttctgaaa 76  Q
    |||||||||| ||||||||||||||||||| |||||||| ||| |||| ||||||||||||||    
T  1515 ttctgcaaaattaaggtaagggtgagactaactctcaatgatcttaatgtataatttctgaaa 1453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0138 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0138
Description:

Target: scaffold0138; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 25 - 81
Target Start/End: Complemental strand, 12352 - 12296
Alignment:
Q  25 taaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattga 81  Q
    ||||||||||||||| ||| |||||||| |||||||| |||||||||||||||||||    
T  12352 taaggtaagggtgaggctaactctcaatgatcataatatataatttctgaaaattga 12296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2054 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold2054
Description:

Target: scaffold2054; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 14 - 77
Target Start/End: Complemental strand, 780 - 717
Alignment:
Q  14 ttctgcaaaactaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaa 77  Q
    |||||||||||||||||||||||| || ||||| ||||| ||| |||| |||||||||||||||    
T  780 ttctgcaaaactaaggtaagggtgggattatctttcaatgatcttaatatataatttctgaaaa 717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0317 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0317
Description:

Target: scaffold0317; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 25 - 88
Target Start/End: Complemental strand, 1441 - 1378
Alignment:
Q  25 taaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaatt 88  Q
    |||||||||||||||||||||| ||||| ||||| || |||||||| |||||||||| ||||||    
T  1441 taaggtaagggtgagactatctttcaatgatcatgatatataatttttgaaaattgatctaatt 1378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0139 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0139
Description:

Target: scaffold0139; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 25 - 80
Target Start/End: Original strand, 14997 - 15052
Alignment:
Q  25 taaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattg 80  Q
    ||||||||||||||||||| |||||||| ||| |||| ||||||||||||||||||    
T  14997 taaggtaagggtgagactaactctcaatgatcttaatatataatttctgaaaattg 15052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0790 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0790
Description:

Target: scaffold0790; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 11 - 53
Target Start/End: Complemental strand, 5522 - 5480
Alignment:
Q  11 ttattctgcaaaactaaggtaagggtgagactatctctcaata 53  Q
    |||||||||||||||||||||||||||||||||||| ||||||    
T  5522 ttattctgcaaaactaaggtaagggtgagactatctttcaata 5480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0096 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0096
Description:

Target: scaffold0096; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 21 - 81
Target Start/End: Original strand, 39503 - 39563
Alignment:
Q  21 aaactaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattga 81  Q
    |||| |||||||||||||| ||| |||||||| |||||||| ||||||||| |||||||||    
T  39503 aaacaaaggtaagggtgaggctaactctcaatgatcataatatataatttcagaaaattga 39563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 15 - 79
Target Start/End: Original strand, 493019 - 493082
Alignment:
Q  15 tctgcaaaactaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaatt 79  Q
    |||||||  ||||||||||||||||| ||||| ||||||||| |||| |||||||||||||||||    
T  493019 tctgcaattctaaggtaagggtgagattatctttcaataatc-taatgtataatttctgaaaatt 493082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0348 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0348
Description:

Target: scaffold0348; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 24 - 79
Target Start/End: Complemental strand, 9391 - 9336
Alignment:
Q  24 ctaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaatt 79  Q
    |||||||||||||| || ||||| |||||| ||||||| |||||||||||||||||    
T  9391 ctaaggtaagggtgggattatctttcaatagtcataatatataatttctgaaaatt 9336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0127 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0127
Description:

Target: scaffold0127; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 24 - 79
Target Start/End: Complemental strand, 10294 - 10239
Alignment:
Q  24 ctaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaatt 79  Q
    ||||||||||||||||| |||||  ||||||||||||| | |||||||||||||||    
T  10294 ctaaggtaagggtgagattatcttccaataatcataatatgtaatttctgaaaatt 10239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0023 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0023
Description:

Target: scaffold0023; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 24 - 79
Target Start/End: Complemental strand, 135493 - 135438
Alignment:
Q  24 ctaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaatt 79  Q
    |||||||||| |||||| ||||| |||||| ||||||| |||||||||||||||||    
T  135493 ctaaggtaagcgtgagattatctttcaatagtcataatatataatttctgaaaatt 135438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1318 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold1318
Description:

Target: scaffold1318; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 25 - 79
Target Start/End: Original strand, 1913 - 1967
Alignment:
Q  25 taaggtaagggtgagactatctctcaataatcataatctataatttctgaaaatt 79  Q
    ||||||||||||| || ||||| |||||| ||||||| |||||||||||||||||    
T  1913 taaggtaagggtgggattatctttcaatagtcataatatataatttctgaaaatt 1967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0609 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0609
Description:

Target: scaffold0609; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 24 - 89
Target Start/End: Original strand, 5857 - 5922
Alignment:
Q  24 ctaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattg 89  Q
    |||||||||||||| || ||||| ||||| || ||||| ||||||||||||||||| | |||||||    
T  5857 ctaaggtaagggtgggattatctttcaatgattataatatataatttctgaaaattaatctaattg 5922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0261 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0261
Description:

Target: scaffold0261; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 14 - 79
Target Start/End: Original strand, 23559 - 23624
Alignment:
Q  14 ttctgcaaaactaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaatt 79  Q
    ||||||||  |||||||||||||| || ||||| | ||| |||||||| |||||||||||||||||    
T  23559 ttctgcaattctaaggtaagggtgggattatctttgaatgatcataatgtataatttctgaaaatt 23624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0335 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0335
Description:

Target: scaffold0335; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 25 - 81
Target Start/End: Original strand, 2628 - 2684
Alignment:
Q  25 taaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattga 81  Q
    ||||||||||||||| ||| |||||||| || ||||| ||||| |||||||||||||    
T  2628 taaggtaagggtgaggctaactctcaatgattataatatataacttctgaaaattga 2684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0053 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 24 - 79
Target Start/End: Original strand, 79490 - 79545
Alignment:
Q  24 ctaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaatt 79  Q
    |||||||||||||| || ||||| |||||| ||||||| | |||||||||||||||    
T  79490 ctaaggtaagggtgggattatctttcaatagtcataatatgtaatttctgaaaatt 79545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0481 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0481
Description:

Target: scaffold0481; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 71
Target Start/End: Original strand, 676 - 721
Alignment:
Q  26 aaggtaagggtgagactatctctcaataatcataatctataatttc 71  Q
    |||||||||||||||||| |||||||| ||| |||| |||||||||    
T  676 aaggtaagggtgagactaactctcaatgatcttaatgtataatttc 721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0249 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0249
Description:

Target: scaffold0249; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 77
Target Start/End: Original strand, 13894 - 13947
Alignment:
Q  24 ctaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaa 77  Q
    |||||||||||||| || ||||| ||||| || ||||| |||||||||||||||    
T  13894 ctaaggtaagggtgggattatctttcaatgattataatatataatttctgaaaa 13947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0600 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0600
Description:

Target: scaffold0600; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 25 - 81
Target Start/End: Complemental strand, 788 - 732
Alignment:
Q  25 taaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattga 81  Q
    ||||||| ||||||| ||| |||||||| || ||||| ||||| |||||||||||||    
T  788 taaggtaggggtgaggctaactctcaatgattataatatataacttctgaaaattga 732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0180 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0180
Description:

Target: scaffold0180; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 25 - 74
Target Start/End: Complemental strand, 11681 - 11630
Alignment:
Q  25 taaggtaagggtgagactatctctcaataatcataa--tctataatttctga 74  Q
    ||||||||||||||||||| ||||||||||| ||||  | ||||||||||||    
T  11681 taaggtaagggtgagactaactctcaataattataaattatataatttctga 11630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0034 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 27 - 79
Target Start/End: Complemental strand, 73337 - 73285
Alignment:
Q  27 aggtaagggtgagactatctctcaataatcataatctataatttctgaaaatt 79  Q
    ||||||||||| || ||||| ||||| |||||||| |||||||| ||||||||    
T  73337 aggtaagggtgggattatctttcaatgatcataatgtataatttatgaaaatt 73285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 25 - 81
Target Start/End: Complemental strand, 121958 - 121902
Alignment:
Q  25 taaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattga 81  Q
    ||||||||||||||| ||| |||||||| || ||||| |||||  ||||||||||||    
T  121958 taaggtaagggtgaggctaactctcaatgattataatatataaaatctgaaaattga 121902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 25 - 81
Target Start/End: Complemental strand, 132834 - 132778
Alignment:
Q  25 taaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattga 81  Q
    ||||||||||||||| ||| |||||||| || ||||| |||||  ||||||||||||    
T  132834 taaggtaagggtgaggctaactctcaatgattataatatataaaatctgaaaattga 132778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 25 - 77
Target Start/End: Complemental strand, 69801 - 69749
Alignment:
Q  25 taaggtaagggtgagactatctctcaataatcataatctataatttctgaaaa 77  Q
    ||||||||||||||||||| || ||||| ||| |||| |||||||| ||||||    
T  69801 taaggtaagggtgagactaactttcaatgatcttaatatataatttatgaaaa 69749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 11 - 39
Target Start/End: Original strand, 80293 - 80321
Alignment:
Q  11 ttattctgcaaaactaaggtaagggtgag 39  Q
    |||||||||||||||||||||||||||||    
T  80293 ttattctgcaaaactaaggtaagggtgag 80321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 11 - 39
Target Start/End: Original strand, 100015 - 100043
Alignment:
Q  11 ttattctgcaaaactaaggtaagggtgag 39  Q
    |||||||||||||||||||||||||||||    
T  100015 ttattctgcaaaactaaggtaagggtgag 100043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University