View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20638_high_3 (Length: 394)
Name: NF20638_high_3
Description: NF20638
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20638_high_3 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 28 - 394
Target Start/End: Complemental strand, 362530 - 362181
Alignment:
| Q |
28 |
caaccgaacgcgagacaaatagaataaaatacggattaaatgtacttagttaggaagatgtttttataattgttgaacttttcaatatccctattttgtt |
127 |
Q |
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| T |
362530 |
caaccgaacgcgagacaaatagaataaaatacggattaaatgtacttag-----aagatgtttttataattgttgaacttttcaatatccctattttgtt |
362436 |
T |
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| Q |
128 |
ggaacaggtagaatacttataatctcaaatttagcacctatcgatctgaaatcgtgaaatactgcaatatccctattttgttggaactttgaaatactat |
227 |
Q |
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| T |
362435 |
ggaacaggtagaatacttataatctcaaatttagcacctatcgatctgaaatcgtgaaatactgcaatatccctattttgttggaactttgaaatactat |
362336 |
T |
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| Q |
228 |
tattcatgaccgatctcaaacacttgaaaaaacacttgaaaaaggtgacatgtttattgtattggagtttgatgaagtcacaatccctattatgcctcaa |
327 |
Q |
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| T |
362335 |
tattcatgaccgatctcaaacacttga------------aaaaggtgacatgtttattgtattggagtttgatgaagtcacaatccctattatgactcaa |
362248 |
T |
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| Q |
328 |
ctaaatttgattacatacacatggccataatccattttacttattcactattatttctctctttaag |
394 |
Q |
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| T |
362247 |
ccaaatttgatttcatacacatggccataatccatttaatttattcactattatttctctttttaag |
362181 |
T |
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