View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20638_high_6 (Length: 360)

Name: NF20638_high_6
Description: NF20638
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20638_high_6
NF20638_high_6
[»] chr5 (4 HSPs)
chr5 (9-339)||(40516664-40516994)
chr5 (180-228)||(42910475-42910523)
chr5 (163-222)||(5173786-5173845)
chr5 (182-223)||(8825465-8825506)
[»] chr7 (3 HSPs)
chr7 (178-246)||(39887629-39887697)
chr7 (182-227)||(36729584-36729629)
chr7 (182-228)||(47430762-47430808)
[»] chr1 (3 HSPs)
chr1 (155-222)||(43049436-43049503)
chr1 (182-241)||(38577926-38577986)
chr1 (180-222)||(13697233-13697275)
[»] scaffold0020 (1 HSPs)
scaffold0020 (191-228)||(172529-172566)
[»] chr3 (1 HSPs)
chr3 (182-246)||(4030229-4030293)
[»] chr8 (2 HSPs)
chr8 (182-229)||(3631174-3631221)
chr8 (195-228)||(28431397-28431430)
[»] chr4 (3 HSPs)
chr4 (182-240)||(30746107-30746165)
chr4 (181-228)||(32028235-32028282)
chr4 (190-223)||(36114915-36114948)
[»] chr2 (3 HSPs)
chr2 (182-222)||(16244926-16244966)
chr2 (181-229)||(36322714-36322762)
chr2 (186-229)||(9436122-9436165)


Alignment Details
Target: chr5 (Bit Score: 275; Significance: 1e-154; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 9 - 339
Target Start/End: Complemental strand, 40516994 - 40516664
Alignment:
Q  9 gcaatgtagagtatcatgcatgggagcagtactatgctcaaatgtttcgttataaacctcaaacttactgttttaattcaatcaaatagagtagtgaaaa 108  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  40516994 gcaatgtagagtatcatgcatgggaccagtactatgctcaaatgtttcgttataaacctcaaatttactgttttaattcaatcaaatagagtagtgaaaa 40516895  T
Q  109 tctatctacttacagagcattaaatatatatttggtatcaatgtgcgtgtgtttgaatcacggcaacctactgtgattttacagaagctacaaagtgtag 208  Q
    ||||||||||| ||||||||||| |||||||||||||||| ||||||||||||||||||||| ||||||||| |||||||| ||||||||||||||||||    
T  40516894 tctatctacttgcagagcattaagtatatatttggtatcactgtgcgtgtgtttgaatcacgacaacctactatgattttatagaagctacaaagtgtag 40516795  T
Q  209 cttttgaaaaatcatggtgggccaccttgattccgacacacatattgcacaatagttttgatgagtgacttgcttgttgcacaataattttgatgagtga 308  Q
    ||||||||||||||||||||||||||||||||| ||||||||| ||| |||||| ||||||||||||| |||||||||||||||||||||||||||||||    
T  40516794 cttttgaaaaatcatggtgggccaccttgattctgacacacatgttgaacaataattttgatgagtgaattgcttgttgcacaataattttgatgagtga 40516695  T
Q  309 aagtcctgagctcaagagacatatgatgatg 339  Q
    ||||||| |||||||||||||||||||||||    
T  40516694 aagtcctcagctcaagagacatatgatgatg 40516664  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 180 - 228
Target Start/End: Original strand, 42910475 - 42910523
Alignment:
Q  180 tgtgattttacagaagctacaaagtgtagcttttgaaaaatcatggtgg 228  Q
    |||||||||  ||||||||||||||| |||||||||||||||| |||||    
T  42910475 tgtgattttgtagaagctacaaagtgcagcttttgaaaaatcacggtgg 42910523  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 163 - 222
Target Start/End: Original strand, 5173786 - 5173845
Alignment:
Q  163 gaatcacggcaacctactgtgattttacagaagctacaaagtgtagcttttgaaaaatca 222  Q
    |||||||||  | |||| |||||||||||||||||||||| ||||| |||| ||||||||    
T  5173786 gaatcacggtgatctaccgtgattttacagaagctacaaaatgtagatttttaaaaatca 5173845  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 182 - 223
Target Start/End: Complemental strand, 8825506 - 8825465
Alignment:
Q  182 tgattttacagaagctacaaagtgtagcttttgaaaaatcat 223  Q
    |||||||||||||| |||||| |||||||||| |||||||||    
T  8825506 tgattttacagaagttacaaaatgtagcttttaaaaaatcat 8825465  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 178 - 246
Target Start/End: Complemental strand, 39887697 - 39887629
Alignment:
Q  178 actgtgattttacagaagctacaaagtgtagcttttgaaaaatcatggtgggccaccttgattccgaca 246  Q
    ||||||||||| ||||||||||||||||||||||||| ||||||| |||||| | || |||||| ||||    
T  39887697 actgtgattttgcagaagctacaaagtgtagcttttggaaaatcacggtgggtcgccatgattctgaca 39887629  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 182 - 227
Target Start/End: Complemental strand, 36729629 - 36729584
Alignment:
Q  182 tgattttacagaagctacaaagtgtagcttttgaaaaatcatggtg 227  Q
    |||||||||| || ||||||||||||||||||| ||||||||||||    
T  36729629 tgattttacaaaacctacaaagtgtagcttttgcaaaatcatggtg 36729584  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 182 - 228
Target Start/End: Original strand, 47430762 - 47430808
Alignment:
Q  182 tgattttacagaagctacaaagtgtagcttttgaaaaatcatggtgg 228  Q
    ||||||| |||||||||| ||||||||||||| ||||||||| ||||    
T  47430762 tgattttgcagaagctaccaagtgtagctttttaaaaatcattgtgg 47430808  T

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Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 155 - 222
Target Start/End: Complemental strand, 43049503 - 43049436
Alignment:
Q  155 gtgtgtttgaatcacggcaacctactgtgattttacagaagctacaaagtgtagcttttgaaaaatca 222  Q
    ||||| |||||||||||| ||| ||  ||||||| |||||||||||||||||||||||| ||||||||    
T  43049503 gtgtgcttgaatcacggcgacccaccatgattttgcagaagctacaaagtgtagcttttaaaaaatca 43049436  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 182 - 241
Target Start/End: Original strand, 38577926 - 38577986
Alignment:
Q  182 tgattttacagaa-gctacaaagtgtagcttttgaaaaatcatggtgggccaccttgattc 241  Q
    ||||||||||||| |||||||||||||||||||| ||||||| ||||| ||| | ||||||    
T  38577926 tgattttacagaaagctacaaagtgtagcttttggaaaatcaaggtggaccaacgtgattc 38577986  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 180 - 222
Target Start/End: Complemental strand, 13697275 - 13697233
Alignment:
Q  180 tgtgattttacagaagctacaaagtgtagcttttgaaaaatca 222  Q
    ||||||||| | ||||||||| |||||||||||||||||||||    
T  13697275 tgtgattttgctgaagctacacagtgtagcttttgaaaaatca 13697233  T

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Target: scaffold0020 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 191 - 228
Target Start/End: Complemental strand, 172566 - 172529
Alignment:
Q  191 agaagctacaaagtgtagcttttgaaaaatcatggtgg 228  Q
    ||||||||||||||||||||||||||||||||||||||    
T  172566 agaagctacaaagtgtagcttttgaaaaatcatggtgg 172529  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 182 - 246
Target Start/End: Original strand, 4030229 - 4030293
Alignment:
Q  182 tgattttacagaagctacaaagtgtagcttttgaaaaatcatggtgggccaccttgattccgaca 246  Q
    ||||||| ||||||||||||||||||||||||||||||| |  |||| ||||| |||||| ||||    
T  4030229 tgattttgcagaagctacaaagtgtagcttttgaaaaattacagtggaccaccgtgattctgaca 4030293  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 182 - 229
Target Start/End: Complemental strand, 3631221 - 3631174
Alignment:
Q  182 tgattttacagaagctacaaagtgtagcttttgaaaaatcatggtggg 229  Q
    |||||||||||||| ||||||||||| |||||||||||||||| ||||    
T  3631221 tgattttacagaagttacaaagtgtatcttttgaaaaatcatgatggg 3631174  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 195 - 228
Target Start/End: Complemental strand, 28431430 - 28431397
Alignment:
Q  195 gctacaaagtgtagcttttgaaaaatcatggtgg 228  Q
    |||| |||||||||||||||||||||||||||||    
T  28431430 gctataaagtgtagcttttgaaaaatcatggtgg 28431397  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 182 - 240
Target Start/End: Original strand, 30746107 - 30746165
Alignment:
Q  182 tgattttacagaagctacaaagtgtagcttttgaaaaatcatggtgggccaccttgatt 240  Q
    ||||||| ||||| ||||||||||| | |||||||||||||||||||| || |||||||    
T  30746107 tgattttgcagaacctacaaagtgttgtttttgaaaaatcatggtgggtcatcttgatt 30746165  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 181 - 228
Target Start/End: Complemental strand, 32028282 - 32028235
Alignment:
Q  181 gtgattttacagaagctacaaagtgtagcttttgaaaaatcatggtgg 228  Q
    |||||||| || |||||| |||||||||||||||||||||||| ||||    
T  32028282 gtgattttgcataagctataaagtgtagcttttgaaaaatcatagtgg 32028235  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 190 - 223
Target Start/End: Complemental strand, 36114948 - 36114915
Alignment:
Q  190 cagaagctacaaagtgtagcttttgaaaaatcat 223  Q
    ||||||||| ||||||||||||||||||||||||    
T  36114948 cagaagctataaagtgtagcttttgaaaaatcat 36114915  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 182 - 222
Target Start/End: Original strand, 16244926 - 16244966
Alignment:
Q  182 tgattttacagaagctacaaagtgtagcttttgaaaaatca 222  Q
    ||||||||||||||||||| ||||||||||||| |||||||    
T  16244926 tgattttacagaagctacagagtgtagcttttggaaaatca 16244966  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 181 - 229
Target Start/End: Complemental strand, 36322762 - 36322714
Alignment:
Q  181 gtgattttacagaagctacaaagtgtagcttttgaaaaatcatggtggg 229  Q
    ||||||||  |||||||||||||||||| ||||||||||||| ||||||    
T  36322762 gtgattttgtagaagctacaaagtgtagtttttgaaaaatcacggtggg 36322714  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 186 - 229
Target Start/End: Original strand, 9436122 - 9436165
Alignment:
Q  186 tttacagaagctacaaagtgtagcttttgaaaaatcatggtggg 229  Q
    ||||||||| ||||||||||||| |||||||||||||| |||||    
T  9436122 tttacagaaactacaaagtgtagtttttgaaaaatcatagtggg 9436165  T

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