View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20638_low_1 (Length: 590)
Name: NF20638_low_1
Description: NF20638
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20638_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 481; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 481; E-Value: 0
Query Start/End: Original strand, 1 - 508
Target Start/End: Original strand, 31876551 - 31877056
Alignment:
| Q |
1 |
attttggaaataagatggtggtggggtgagaggaggaagtgaattttggtttgatctatgtttaggtgtacctggttgagattcccatacaaatggaatt |
100 |
Q |
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| T |
31876551 |
attttggaaataagatggtggtggggtgagaggagggagtgaattttggtttgatctatgtttaggtgtacctggttgagattcccatacaaatggaatt |
31876650 |
T |
|
| Q |
101 |
gatgcaaatttgtttccatggtaatcttcatttgagatattggataattgtctttgtagttgctcatctaagcacatcatcttcttgttctcttgtcttt |
200 |
Q |
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| T |
31876651 |
gatgcaaatttgtttccatggtaatcttcatttgagatattggataattgtctttgtagttgctcatctaagcacatcatcttcttgttctcttgtcttt |
31876750 |
T |
|
| Q |
201 |
gtacaattatgggagatggcttttggagaaagtttgaaggctttgtcatgtttatttggtggggttagctatatagcaaattgagggtgtgtatttatgt |
300 |
Q |
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| T |
31876751 |
gtacaattatgggagatggcttttggagaaagtttgaaggctttgtcatgtttatttggtggggttagctatttagcaaattgagggtgtgtatttatgt |
31876850 |
T |
|
| Q |
301 |
tataatgtatatataagtagtagattagaatttgtgtgagacatgttcaaagggttttggtacaatgaaagagtagtttaagacttttttaagttcaaat |
400 |
Q |
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| T |
31876851 |
tataatgtatatataagtagtagattagaatttgtgtgagacatgttcaaagggttttggtataatgaaagagtagtttaagacttttttaagttcaaat |
31876950 |
T |
|
| Q |
401 |
gggaatctctctaacattagattggaattaattggtagtgggtacattttgttatttttaagtggtttccacattctagttgagttttgtgatcgttgaa |
500 |
Q |
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| T |
31876951 |
gggaa--tctctaacattagattggaattaattggtagtgggtacattttgttatttttaagtggtttccacattctagtggagttttgtgatcgttgaa |
31877048 |
T |
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| Q |
501 |
ttaagaaa |
508 |
Q |
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| T |
31877049 |
ttaagaaa |
31877056 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 502 - 574
Target Start/End: Complemental strand, 31877108 - 31877036
Alignment:
| Q |
502 |
taagaaaataaaaatatcactatttaattatttggatatagttgacttcccctttcttaattcaacgatcaca |
574 |
Q |
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| T |
31877108 |
taagaaaataaaaatatcactatttaattatttggatatagttgacttcccctttcttaattcaacgatcaca |
31877036 |
T |
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