View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20639_high_1 (Length: 735)
Name: NF20639_high_1
Description: NF20639
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20639_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 317; Significance: 1e-178; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 317; E-Value: 1e-178
Query Start/End: Original strand, 33 - 433
Target Start/End: Complemental strand, 44920306 - 44919911
Alignment:
| Q |
33 |
gttgcatgtggacaatgcctcagccaacaaaacaattagtaaccctctttactactcatcgattcgattccacaatggcagatcaggacaagtaagcctt |
132 |
Q |
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| T |
44920306 |
gttgcatgtggacaatgccttagccaacaaaacaattagtaaccctctttactactcatcgattcgattccacaatggcagatcaggacaagcaagcctt |
44920207 |
T |
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| Q |
133 |
gtatctggtatcgacggtctagattattttgtgcggccttgatttagtggatttagggcaagtccatatcatggtccatgtaagtgcgagtgacttgaga |
232 |
Q |
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| T |
44920206 |
gtatctggtatcgacggtctagattattttgtgcggccttgatttagtggatttagggaaagtccatatcatggtccatgtaagtgcgagtgacttgaga |
44920107 |
T |
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| Q |
233 |
ttacttggaacccataatagccaacgaccgtattgtctctttatttattataatgacacaactgacttagaaatcagatgaaaacaatacaataaaagaa |
332 |
Q |
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| T |
44920106 |
ttactcggaacccataatagccaacgaccgtattgtctctttatttattataatgacacaactgacttacaaatcagatgaaaataatacaataaaagaa |
44920007 |
T |
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| Q |
333 |
actatttattgtgaaagactaaaagttgcattatctatatatagtatgagagactaaccttnnnnnnnnnntgtcatggactaaaataggacttgactcg |
432 |
Q |
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| T |
44920006 |
actatttattatgaaagactaaaagttgcattatc----tatagtatgagagactaacctt-aaaaaaaaatgtcattgactaaaataggacttgactcg |
44919912 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 497 - 718
Target Start/End: Complemental strand, 44919847 - 44919626
Alignment:
| Q |
497 |
gtgggagaacatccaaatcctccaaaatttatttccatagttggcctcatttaggcccacatcgaatcaaagactatatctactagcaataagaagagaa |
596 |
Q |
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| T |
44919847 |
gtgggagaacatcgaaatcctccaaaatttatttccatagttggcctcatttaggcccacatcgaatcaaagactatatctactagcaataagaagagaa |
44919748 |
T |
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| Q |
597 |
agaatttaggcagctggtctgtacagtttgaggctatgtatgttggaaccttttggactttcctttttgggtatagtatgattcttcacttgttaattgt |
696 |
Q |
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| T |
44919747 |
agaatttaggcagctggtctgtacagtttgaggctatgtatgttggaaccttttggactttcctttttgggtatagtatgattcttcacttgttaattgt |
44919648 |
T |
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| Q |
697 |
tgttgattattggttggggttg |
718 |
Q |
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| T |
44919647 |
tgttgattattggttggggttg |
44919626 |
T |
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