View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20639_high_14 (Length: 250)
Name: NF20639_high_14
Description: NF20639
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20639_high_14 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 14 - 250
Target Start/End: Original strand, 56164677 - 56164916
Alignment:
| Q |
14 |
atatcaacagatttattaatgcagcaatacaaagaggaattgaaaacctagacattgacaggttggaggatgttaatggattaaccagtagcatttttag |
113 |
Q |
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| T |
56164677 |
atatcaacagatttattaatgcagcaatacaaagaggaattgaaaacctagacattgacatgttggaggatgttaatggattaaccagtagcatttttag |
56164776 |
T |
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| Q |
114 |
ttgcaagacactcactgttctcaaa---ctgaaaaacctgtttgtgaaagatgacaattaccaagtagatcttcctttactcaaagttctctgtatagat |
210 |
Q |
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| T |
56164777 |
ttgcaagacactcactgttctcaaattgttgaaaaacctgtttgtgaaagatgacaattaccaagtagatcttcctttactcaaagttctctgtatagat |
56164876 |
T |
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| Q |
211 |
attatgaggttcagttatcaagcaactattaccaagtttt |
250 |
Q |
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| T |
56164877 |
attatgaggttcagttatcaagcaactattaccaagtttt |
56164916 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 64; Significance: 4e-28; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 43 - 186
Target Start/End: Original strand, 44253419 - 44253562
Alignment:
| Q |
43 |
caaagaggaattgaaaacctagacattgacaggttggaggatgttaatggattaaccagtagcatttttagttgcaagacactcactgttctcaaactga |
142 |
Q |
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| T |
44253419 |
caaagaggaatcgaagaactagacattgacatgttggagaatgttaatggattaacagatagcattttcagttgcaagacactcactgtcctcaaattga |
44253518 |
T |
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| Q |
143 |
aaaacctgtttgtgaaagatgacaattaccaagtagatcttcct |
186 |
Q |
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| T |
44253519 |
aaaacctatcgatgagagacgacaattgtcaaatagatcttcct |
44253562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 59
Target Start/End: Original strand, 44258860 - 44258900
Alignment:
| Q |
19 |
aacagatttattaatgcagcaatacaaagaggaattgaaaa |
59 |
Q |
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| T |
44258860 |
aacagattcattaatgcagcaatacaaagaggaatggaaaa |
44258900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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