View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20639_high_16 (Length: 244)
Name: NF20639_high_16
Description: NF20639
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20639_high_16 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 19 - 244
Target Start/End: Original strand, 6846544 - 6846769
Alignment:
| Q |
19 |
accgtatacacattttgtatgattttgagtgcatgtagtcgtctgaaagattatttttctgggagattgattcatgcacgtgtaattgtcaggaatgtgt |
118 |
Q |
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| T |
6846544 |
accgtatacacattttgtatgattttgagtgcatgtagtcgtctgaaagattatttttctgggagattgattcatgcacgtgtaattgtcgggaatgtgt |
6846643 |
T |
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| Q |
119 |
cgccggatttacatctgcagaatgcacttgttgacatgtactgcaatgctggtgatacacaaacggcgtatatgatttttagtagaatggaaaagtggga |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6846644 |
cgccggatttacatctgcagaatgcacttgttgacatgtactgcaatgctggtgatacacaaacggcgtatatgatttttagtagaatggaaaagtggga |
6846743 |
T |
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| Q |
219 |
tttagtttcttggaattctatgattt |
244 |
Q |
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|||||||||||||||||||||||||| |
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| T |
6846744 |
tttagtttcttggaattctatgattt |
6846769 |
T |
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