View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20639_high_2 (Length: 574)
Name: NF20639_high_2
Description: NF20639
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20639_high_2 |
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| [»] scaffold0477 (1 HSPs) |
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Alignment Details
Target: scaffold0477 (Bit Score: 332; Significance: 0; HSPs: 1)
Name: scaffold0477
Description:
Target: scaffold0477; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 50 - 568
Target Start/End: Complemental strand, 969 - 447
Alignment:
| Q |
50 |
tagttgatatattgataggaaatatttcatatgtcttatcaattgtnnnnnnngcatatggccaacattagcaagaataatgatttatgtggataaaaaa |
149 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
969 |
tagttgatatattgataggaaatatttcatatttcttatcaattgtaaaaaaagcatatggccaacattagcaagaataatgatttatgtagataaaaaa |
870 |
T |
|
| Q |
150 |
tgaactgttaagcagaaaatagaaaataa-gcttaaaacgcagtttggatataggttctggaacacatacaagcacttaaacttgcatttagataatact |
248 |
Q |
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|||||||||||||| |||||||||||||| ||||||||||||||||||||||||||| ||| | | | | |||||||||||||||||||||||||||||| |
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| T |
869 |
tgaactgttaagcaaaaaatagaaaataaagcttaaaacgcagtttggatataggttttgggaaaaaaaaaagcacttaaacttgcatttagataatact |
770 |
T |
|
| Q |
249 |
agagttttactgtcacgacaaagaaaac--aatagtaactcttcacnnnnnnnngtcaactattgtttg---ggtgatcatattttagatcatcttccaa |
343 |
Q |
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||||||||||||||| |||||| |||| |||||||||||||||| | | || |||| |||||||||||||||||||||||||||| |
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| T |
769 |
agagttttactgtcaagacaaaaaaaaacaaatagtaactcttcactttttttttttt--ttttttttgtatggtgatcatattttagatcatcttccaa |
672 |
T |
|
| Q |
344 |
gtatattgatgtaaattaataccttagacaattgacaagtgaaataaagacattttgtttggtggtaaagtagtagtttttggtggagatttcagacaga |
443 |
Q |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| ||||||||||||||||| |
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| T |
671 |
gcatattgatgtaaattaataccttagacaattgacaagtgaaataaagacattttgtttggtggtaaagcagtggtttttgatggagatttcagacaga |
572 |
T |
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| Q |
444 |
ttttgcttgtaattcccaaaggtattagacaagaagttgtcattctattattaattcatcctatctttgagttatgatttgccgatatcacgaaacatga |
543 |
Q |
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| T |
571 |
ttttgccgataattcccaaaggtattagacaagaagttgtcattctactattaattcatcctatctttgagttatgatttgccgttatcacgaaacatga |
472 |
T |
|
| Q |
544 |
atggtgatgcaattgatgatgtcca |
568 |
Q |
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| T |
471 |
atggtgatgcaattgatgatgtcca |
447 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 332; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 50 - 568
Target Start/End: Complemental strand, 4649952 - 4649430
Alignment:
| Q |
50 |
tagttgatatattgataggaaatatttcatatgtcttatcaattgtnnnnnnngcatatggccaacattagcaagaataatgatttatgtggataaaaaa |
149 |
Q |
| |
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|||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
4649952 |
tagttgatatattgataggaaatatttcatatttcttatcaattgtaaaaaaagcatatggccaacattagcaagaataatgatttatgtagataaaaaa |
4649853 |
T |
|
| Q |
150 |
tgaactgttaagcagaaaatagaaaataa-gcttaaaacgcagtttggatataggttctggaacacatacaagcacttaaacttgcatttagataatact |
248 |
Q |
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|||||||||||||| |||||||||||||| ||||||||||||||||||||||||||| ||| | | | | |||||||||||||||||||||||||||||| |
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| T |
4649852 |
tgaactgttaagcaaaaaatagaaaataaagcttaaaacgcagtttggatataggttttgggaaaaaaaaaagcacttaaacttgcatttagataatact |
4649753 |
T |
|
| Q |
249 |
agagttttactgtcacgacaaagaaaac--aatagtaactcttcacnnnnnnnngtcaactattgtttg---ggtgatcatattttagatcatcttccaa |
343 |
Q |
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||||||||||||||| |||||| |||| |||||||||||||||| | | || |||| |||||||||||||||||||||||||||| |
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| T |
4649752 |
agagttttactgtcaagacaaaaaaaaacaaatagtaactcttcactttttttttttt--ttttttttgtatggtgatcatattttagatcatcttccaa |
4649655 |
T |
|
| Q |
344 |
gtatattgatgtaaattaataccttagacaattgacaagtgaaataaagacattttgtttggtggtaaagtagtagtttttggtggagatttcagacaga |
443 |
Q |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| ||||||||||||||||| |
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| T |
4649654 |
gcatattgatgtaaattaataccttagacaattgacaagtgaaataaagacattttgtttggtggtaaagcagtggtttttgatggagatttcagacaga |
4649555 |
T |
|
| Q |
444 |
ttttgcttgtaattcccaaaggtattagacaagaagttgtcattctattattaattcatcctatctttgagttatgatttgccgatatcacgaaacatga |
543 |
Q |
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| T |
4649554 |
ttttgccgataattcccaaaggtattagacaagaagttgtcattctactattaattcatcctatctttgagttatgatttgccgttatcacgaaacatga |
4649455 |
T |
|
| Q |
544 |
atggtgatgcaattgatgatgtcca |
568 |
Q |
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||||||||||||||||||||||||| |
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| T |
4649454 |
atggtgatgcaattgatgatgtcca |
4649430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 384 - 444
Target Start/End: Complemental strand, 47400155 - 47400095
Alignment:
| Q |
384 |
gaaataaagacattttgtttggtggtaaagtagtagtttttggtggagatttcagacagat |
444 |
Q |
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|||||||| ||||| |||||||||||||| || ||||||||||| || ||||||||||| |
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| T |
47400155 |
gaaataaaaacattccatttggtggtaaagttgtggtttttggtggtgacttcagacagat |
47400095 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 417 - 449
Target Start/End: Original strand, 9825372 - 9825404
Alignment:
| Q |
417 |
tagtttttggtggagatttcagacagattttgc |
449 |
Q |
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||||||||||||||||||| ||||||||||||| |
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| T |
9825372 |
tagtttttggtggagattttagacagattttgc |
9825404 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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