View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20639_high_5 (Length: 453)
Name: NF20639_high_5
Description: NF20639
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20639_high_5 |
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Alignment Details
Target: chr7 (Bit Score: 359; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 11 - 435
Target Start/End: Complemental strand, 25015442 - 25015016
Alignment:
| Q |
11 |
cacagagtaaggaatccaatgaacttattgcacccttgtttatatttgaatcattgtttcatacaatttaattatgnnnnnnnnnnnnnnn--aatattt |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
25015442 |
cacagagtaaggaatccaatgaacttattgcacccttgtttatatttgaatcattgtttcatacaatttaattatgatttttttattttttttaatattt |
25015343 |
T |
|
| Q |
109 |
gattctggattgatttgattctgtttgctgattgttacttcaaatattgcagacaaattgccttcttcactggtcctacaggtatataaaattgttcatt |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25015342 |
gattctggattgatttgattctgtttgctgattgttacttcaaatattgcagacaaattgccttcttcactggtcctacaggtatataaaattgttcatt |
25015243 |
T |
|
| Q |
209 |
attcattaattaatgtaaattttgatctaaattgaatataattgattatgtggaactaaaatttacgtattctctattattacagttggaggacttctta |
308 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
25015242 |
attccttaattaatgtaaattttgatctaaattgaatataattgattatgtggaactaaaatttatgtattctctattattacagttggaggacttctta |
25015143 |
T |
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| Q |
309 |
atgcaacatgtgggaatattaccgagctgatcatagcaatatttgctcttagcagcaaccaaattgctgttgtcaagtattctcttttaggttccatcct |
408 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25015142 |
atgcaacatgtgggaatattactgagctgatcatagcaatatttgctcttagcagcaaccaaattgctgttgtcaagtattctcttttaggttccatcct |
25015043 |
T |
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| Q |
409 |
ttcaaaccttcttcttgtgcttggaac |
435 |
Q |
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| T |
25015042 |
ttcaaaccttcttcttgtgcttggaac |
25015016 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 147; Significance: 2e-77; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 191 - 435
Target Start/End: Complemental strand, 12662971 - 12662725
Alignment:
| Q |
191 |
tatataaaattgttcattattcattaattaatgta-aattttgatctaaattgaatataattgattatgtggaactaaaa-tttacgtattctctattat |
288 |
Q |
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||||||||||||||||| | ||||| |||||||| |||||||| |||| | |||||||||||||||||| | ||||| |||| | |||||||||||| |
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| T |
12662971 |
tatataaaattgttcataactcattgattaatgtttaattttgaactaagctaaatataattgattatgtgaagctaaatgtttatgcattctctattat |
12662872 |
T |
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| Q |
289 |
tacagttggaggacttcttaatgcaacatgtgggaatattaccgagctgatcatagcaatatttgctcttagcagcaaccaaattgctgttgtcaagtat |
388 |
Q |
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|||||||||||| |||||||||||||||| |||||||||||| ||| |||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12662871 |
tacagttggagggcttcttaatgcaacatttgggaatattactgagttgatagtagcaatatttgctcttagcagcaaccaaattgctgttgtcaagtat |
12662772 |
T |
|
| Q |
389 |
tctcttttaggttccatcctttcaaaccttcttcttgtgcttggaac |
435 |
Q |
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| T |
12662771 |
tctcttttaggttccatcctttcaaaccaccttcttgtgcttggaac |
12662725 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 56; Significance: 5e-23; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 296 - 435
Target Start/End: Original strand, 5129633 - 5129772
Alignment:
| Q |
296 |
ggaggacttcttaatgcaacatgtgggaatattaccgagctgatcatagcaatatttgctcttagcagcaaccaaattgctgttgtcaagtattctcttt |
395 |
Q |
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||||||||| | |||||||||||||||||| ||| || || ||||| ||||||||||| ||||||| ||| |||||| ||| |||||||||||||| |
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| T |
5129633 |
ggaggacttttgaatgcaacatgtgggaatgctacagaactcatcattgcaatatttgcacttagcaataacaaaattgatgtggtcaagtattctctcc |
5129732 |
T |
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| Q |
396 |
taggttccatcctttcaaaccttcttcttgtgcttggaac |
435 |
Q |
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| T |
5129733 |
ttggttccatactctccaaccttcttcttgttcttggaac |
5129772 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 54; Significance: 8e-22; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 374 - 431
Target Start/End: Complemental strand, 2629621 - 2629564
Alignment:
| Q |
374 |
gctgttgtcaagtattctcttttaggttccatcctttcaaaccttcttcttgtgcttg |
431 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
2629621 |
gctgttgtcaagtattctcttataggttccatcctttcaaaccttcttcttgtgcttg |
2629564 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 374 - 431
Target Start/End: Complemental strand, 22979542 - 22979485
Alignment:
| Q |
374 |
gctgttgtcaagtattctcttttaggttccatcctttcaaaccttcttcttgtgcttg |
431 |
Q |
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| T |
22979542 |
gctgttgtcaagtattctcttataggttccatcctttcaaaccttcttcttgtgcttg |
22979485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 374 - 431
Target Start/End: Original strand, 23808862 - 23808919
Alignment:
| Q |
374 |
gctgttgtcaagtattctcttttaggttccatcctttcaaaccttcttcttgtgcttg |
431 |
Q |
| |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
23808862 |
gctgttgtcaagtattctcttataggttccatcctttcaaaccttcttcttgtgcttg |
23808919 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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