View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20639_high_7 (Length: 407)
Name: NF20639_high_7
Description: NF20639
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20639_high_7 |
 | |
|
| [»] chr5 (1 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 375; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 17 - 407
Target Start/End: Complemental strand, 6847183 - 6846793
Alignment:
| Q |
17 |
cactcaaaactccactgagaacatagtcatcaatctcatgagcttcatgatgcatttcagaaaagcatctaattgcacccattccatcacccattttgga |
116 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
6847183 |
cactcaaaactccactgagaacgtagtcatcaatctcatgaacttcatgatgcatttcagaaaagcatctaattgcacccattccatcagccattttgga |
6847084 |
T |
|
| Q |
117 |
ataaccagttatcatttcagtccagagaatagcatcctttcctgggattgaacaaaatgcacgcagagcagcttcagtttcttgatttttgaaatacatc |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6847083 |
ataaccagttatcatttcagtccagagaatagcatcctttcctgggattgaacaaaatacacgcagagcagcttcagtttcttgatttttgaaatacatc |
6846984 |
T |
|
| Q |
217 |
gatactagagtgcttcccacaaacacgcttcttacaaatcctgctttaataacctgaccatgaagaggttttccataactgaaacacgggaatgcaccgg |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6846983 |
gatactagagtgcttcccacaaacacgcttcttacaaatcctgctttaataacctgaccatgaagaggttttccataactgaaacacgggaatgcaccgg |
6846884 |
T |
|
| Q |
317 |
ttgcagatataatcccagcatatgtatagtcatctggtttagggaagcacagtgccttcaactggacaaacaaattcatcgccttctctcc |
407 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6846883 |
ttgcagatataatcccagcatatgtatagtcatctggtttagggaagcacagtgccttcaactggacaaacaaattcatcgccttctctcc |
6846793 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University