View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20639_low_10 (Length: 327)
Name: NF20639_low_10
Description: NF20639
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20639_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 290; Significance: 1e-163; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 2 - 306
Target Start/End: Original strand, 30275548 - 30275850
Alignment:
| Q |
2 |
caagaggataagttcttaaaaataatttatgttcgttacaatttacaatctgctgtgtttagttattaagtagaaacgacgttcaacattaaattatagt |
101 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30275548 |
caagaggataagttcttaaaaataatttatgttcgttacaatttacaatctgctgtgtttagttattaagtagaaacgacgttcaacattaaattatagt |
30275647 |
T |
|
| Q |
102 |
atcacattagagattagaccaacataaatgtggtgtatcaactgttaaatgcttcttttataaagctaaacagaaaatcaaaacacatcagtaatgttta |
201 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30275648 |
atcacaatagagattagaccaacataaatgtggtgtatcaactgttaaatgcttcttttataaagctaaacagaaaatcaaaacacatcagtaatgttta |
30275747 |
T |
|
| Q |
202 |
ataatgtatggtaattatgaacacacctgtaatagtgtcagaaccttccggccactagaagttagcagacaataatcaggttgttcggttgaagacccag |
301 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30275748 |
ataatgtatggtaat--tgaacacacctgtaatagtgtcagaaccttccggccactagaagttagcagacaataatcaggttgttcggttgaagacccag |
30275845 |
T |
|
| Q |
302 |
ctccg |
306 |
Q |
| |
|
||||| |
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| T |
30275846 |
ctccg |
30275850 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 226; Significance: 1e-124; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 2 - 306
Target Start/End: Original strand, 7778859 - 7779161
Alignment:
| Q |
2 |
caagaggataagttcttaaaaataatttatgttcgttacaatttacaatctgctgtgtttagttattaagtagaaacgacgttcaacattaaattatagt |
101 |
Q |
| |
|
|||||| ||||| |||||||||||||||||||| |||||||||||||||||| ||||||||||| |||||||||||| |||||||||||||| ||||||| |
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| T |
7778859 |
caagagtataaggtcttaaaaataatttatgttagttacaatttacaatctgttgtgtttagttgttaagtagaaacaacgttcaacattaagttatagt |
7778958 |
T |
|
| Q |
102 |
atcacattagagattagaccaacataaatgtggtgtatcaactgttaaatgcttcttttataaagctaaacagaaaatcaaaacacatcagtaatgttta |
201 |
Q |
| |
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|||| ||||||||||||||| ||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
7778959 |
atcagattagagattagaccgacataaatgcggtgtatcaactgttaaatgcttctttgataaagctaaacagaaaatcaaaacacatcagtaatgttta |
7779058 |
T |
|
| Q |
202 |
ataatgtatggtaattatgaacacacctgtaatagtgtcagaaccttccggccactagaagttagcagacaataatcaggttgttcggttgaagacccag |
301 |
Q |
| |
|
||||| ||||||||| ||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||| ||||||| |||| |
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| T |
7779059 |
ataatatatggtaat--tgaacacacctgtaatagtgtcagaacgttctggccactagaagttagcagacaataatcaggttgttcttttgaagatccag |
7779156 |
T |
|
| Q |
302 |
ctccg |
306 |
Q |
| |
|
||||| |
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|
| T |
7779157 |
ctccg |
7779161 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 134 - 190
Target Start/End: Complemental strand, 28843301 - 28843245
Alignment:
| Q |
134 |
gtgtatcaactgttaaatgcttcttttataaagctaaacagaaaatcaaaacacatc |
190 |
Q |
| |
|
|||||||||||||||| | | ||||||||||| ||||||| || || |||||||||| |
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|
| T |
28843301 |
gtgtatcaactgttaagtacctcttttataaatctaaacataatattaaaacacatc |
28843245 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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