View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20639_low_13 (Length: 251)
Name: NF20639_low_13
Description: NF20639
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20639_low_13 |
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| [»] scaffold0189 (1 HSPs) |
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Alignment Details
Target: scaffold0189 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: scaffold0189
Description:
Target: scaffold0189; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 12 - 251
Target Start/End: Original strand, 25257 - 25496
Alignment:
| Q |
12 |
atgaagcaacttaaagcctcatcgaggtaagttatatatgtaacttgcacaattaatcttatgcaagttttttggttcagcactttaagacttctgttca |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
25257 |
atgaagcaacttaaagcctcatcgaggtaagttatatatgtaacttgcacaattaatcttattcaagttttttggttcagcactttaagacttctgttca |
25356 |
T |
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| Q |
112 |
catattcgatatcatatatgttacgagaaatattaggataatgataaatagaagataaatatagattatgaattaaattttcaattgaggatacatatgc |
211 |
Q |
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| T |
25357 |
catattcgatatcatatatgttacgagaaatattaggataatgataaatagaagataaatatagattatgaattaaattttcaattgaggatacatatgc |
25456 |
T |
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| Q |
212 |
atcctcagtacacctaaacggcttccattatgaatcaaac |
251 |
Q |
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| T |
25457 |
atcctcagtacacctaaacggcttccattatgaatcaaac |
25496 |
T |
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Target: chr7 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 120 - 243
Target Start/End: Complemental strand, 6927641 - 6927517
Alignment:
| Q |
120 |
atatcatatatgttacgagaaatattaggataatgataa-atagaagataaatatagattatgaattaaattttcaattgaggatacatatgcatcctca |
218 |
Q |
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|||||| ||||||||| | |||||||| ||||||||||| ||||||||||||| |||||| | |||||| ||||||| ||||||||||||| ||||| | |
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| T |
6927641 |
atatcagatatgttacaaaaaatattatgataatgataatatagaagataaatgtagattctaaattaatctttcaatcgaggatacatatgtatcctta |
6927542 |
T |
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| Q |
219 |
gtacacctaaacggcttccattatg |
243 |
Q |
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| T |
6927541 |
atatactgaaatggcttccattatg |
6927517 |
T |
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Target: chr4 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 120 - 243
Target Start/End: Complemental strand, 502898 - 502774
Alignment:
| Q |
120 |
atatcatatatgttacgagaaatattaggataatgataa-atagaagataaatatagattatgaattaaattttcaattgaggatacatatgcatcctca |
218 |
Q |
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|||||| ||||||||| | |||||||| ||||||||||| ||||||||||||| |||||| | |||||| ||||||| ||||||||||||| ||||| | |
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| T |
502898 |
atatcagatatgttacaaaaaatattatgataatgataatatagaagataaatgtagattctaaattaatctttcaatcgaggatacatatgtatcctta |
502799 |
T |
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| Q |
219 |
gtacacctaaacggcttccattatg |
243 |
Q |
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|| || ||| ||||||||||||| |
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| T |
502798 |
atatactgaaatggcttccattatg |
502774 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 120 - 243
Target Start/End: Complemental strand, 17254606 - 17254482
Alignment:
| Q |
120 |
atatcatatatgttacgagaaatattaggataatgataa-atagaagataaatatagattatgaattaaattttcaattgaggatacatatgcatcctca |
218 |
Q |
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|||||| ||||||||| | |||||||| ||||||||||| ||||||||||||| |||||| | |||||| ||||||| ||||||||||||| ||||| | |
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| T |
17254606 |
atatcagatatgttacaaaaaatattatgataatgataatatagaagataaatgtagattctaaattaatctttcaatcgaggatacatatgtatcctta |
17254507 |
T |
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| Q |
219 |
gtacacctaaacggcttccattatg |
243 |
Q |
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|| || ||| ||||||||||||| |
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| T |
17254506 |
atatactgaaatggcttccattatg |
17254482 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 120 - 243
Target Start/End: Original strand, 20374533 - 20374657
Alignment:
| Q |
120 |
atatcatatatgttacgagaaatattaggataatgataa-atagaagataaatatagattatgaattaaattttcaattgaggatacatatgcatcctca |
218 |
Q |
| |
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|||||| ||||||||| | |||||||| ||||||||||| ||||||||||||| ||||||| |||||| ||||||| ||||||||||||| ||||| | |
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| T |
20374533 |
atatcaaatatgttacaaaaaatattatgataatgataatatagaagataaatgcagattataaattaatctttcaatcgaggatacatatgtatcctta |
20374632 |
T |
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| Q |
219 |
gtacacctaaacggcttccattatg |
243 |
Q |
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|| || ||| ||||||||||||| |
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| T |
20374633 |
atatactgaaatggcttccattatg |
20374657 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 120 - 216
Target Start/End: Complemental strand, 14539407 - 14539310
Alignment:
| Q |
120 |
atatcatatatgttacgagaaatattaggataatgataa-atagaagataaatatagattatgaattaaattttcaattgaggatacatatgcatcct |
216 |
Q |
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|||||| ||||||||| | |||||||| ||||||||||| ||||||||||||| |||||| | |||||| ||||||| ||||||||||||| ||||| |
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| T |
14539407 |
atatcagatatgttacaaaaaatattatgataatgataatatagaagataaatgtagattctaaattaatctttcaatcgaggatacatatgtatcct |
14539310 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 120 - 243
Target Start/End: Complemental strand, 20855642 - 20855518
Alignment:
| Q |
120 |
atatcatatatgttacgagaaatattaggataatgataa-atagaagataaatatagattatgaattaaattttcaattgaggatacatatgcatcctca |
218 |
Q |
| |
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|||||| ||||||||| | | |||||| ||||||||||| ||||||||||||| |||||| | |||||| ||||||| ||||||||||||| ||||| | |
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| T |
20855642 |
atatcagatatgttacaaaagatattatgataatgataatatagaagataaatgtagattctaaattaatctttcaatcgaggatacatatgtatcctta |
20855543 |
T |
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| Q |
219 |
gtacacctaaacggcttccattatg |
243 |
Q |
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|| || ||| ||||||||||||| |
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| T |
20855542 |
atatactgaaatggcttccattatg |
20855518 |
T |
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