View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20639_low_15 (Length: 246)

Name: NF20639_low_15
Description: NF20639
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20639_low_15
NF20639_low_15
[»] scaffold0189 (1 HSPs)
scaffold0189 (18-246)||(25542-25770)
[»] chr7 (2 HSPs)
chr7 (174-245)||(42168579-42168649)
chr7 (174-245)||(6927390-6927460)
[»] chr2 (1 HSPs)
chr2 (174-245)||(17254355-17254425)
[»] chr1 (2 HSPs)
chr1 (174-245)||(20374714-20374784)
chr1 (174-243)||(20482133-20482201)
[»] chr6 (1 HSPs)
chr6 (174-245)||(14539156-14539226)
[»] chr4 (2 HSPs)
chr4 (174-245)||(502647-502717)
chr4 (174-238)||(1031657-1031720)
[»] chr8 (1 HSPs)
chr8 (174-238)||(39231046-39231109)


Alignment Details
Target: scaffold0189 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: scaffold0189
Description:

Target: scaffold0189; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 18 - 246
Target Start/End: Complemental strand, 25770 - 25542
Alignment:
Q  18 aacattggtattcctcttgcaagacaaattcagctgattcaagatgtgtgctacttttgatggcattgaagaaattttgtttgagagttcacttgtagtg 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25770 aacattggtattcctcttgcaagacaaattcagctgattcaagatgtgtgctacttttgatggcattgaagaaattttgtttgagagttcacttgtagtg 25671  T
Q  118 cacttctctgtcaccgtatcaatggagaagaggctgagaataaaatgaatattttgtcaagttttggctaaaaataaagatcttgatagcgaaaaacaaa 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25670 cacttctctgtcaccgtatcaatggagaagaggctgagaataaaatgaatattttgtcaagttttggctaaaaataaagatcttgatagcgaaaaacaaa 25571  T
Q  218 tacctaatgaattttaaattaattctttt 246  Q
    |||||||||||||||||||||||||||||    
T  25570 tacctaatgaattttaaattaattctttt 25542  T

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Target: chr7 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 174 - 245
Target Start/End: Original strand, 42168579 - 42168649
Alignment:
Q  174 tcaagttttggctaaaaataaagatcttgatagcgaaaaacaaatacctaatgaattttaaattaattcttt 245  Q
    |||||||||||||||||||||||||||||||||||||| | ||| | |||||||||||||||||| ||||||    
T  42168579 tcaagttttggctaaaaataaagatcttgatagcgaaaca-aaaaaactaatgaattttaaattatttcttt 42168649  T

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Target: chr7; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 174 - 245
Target Start/End: Original strand, 6927390 - 6927460
Alignment:
Q  174 tcaagttttggctaaaaataaagatcttgatagcgaaaaacaaatacctaatgaattttaaattaattcttt 245  Q
    |||||||||| ||||||||||||||||||||||||||| | ||| | |||||||||||||||||| ||||||    
T  6927390 tcaagttttgactaaaaataaagatcttgatagcgaaaca-aaaaaactaatgaattttaaattatttcttt 6927460  T

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Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 174 - 245
Target Start/End: Original strand, 17254355 - 17254425
Alignment:
Q  174 tcaagttttggctaaaaataaagatcttgatagcgaaaaacaaatacctaatgaattttaaattaattcttt 245  Q
    |||||||||||||||||||||||||||||||||||||| | ||| | |||||||||||||||||| ||||||    
T  17254355 tcaagttttggctaaaaataaagatcttgatagcgaaaca-aaaaaactaatgaattttaaattatttcttt 17254425  T

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Target: chr1 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 174 - 245
Target Start/End: Complemental strand, 20374784 - 20374714
Alignment:
Q  174 tcaagttttggctaaaaataaagatcttgatagcgaaaaacaaatacctaatgaattttaaattaattcttt 245  Q
    |||||||||||||||||||||||||||||||||||||| | ||| | |||||||||||||||||| ||||||    
T  20374784 tcaagttttggctaaaaataaagatcttgatagcgaaaca-aaaaaactaatgaattttaaattatttcttt 20374714  T

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Target: chr1; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 174 - 243
Target Start/End: Complemental strand, 20482201 - 20482133
Alignment:
Q  174 tcaagttttggctaaaaataaagatcttgatagcgaaaaacaaatacctaatgaattttaaattaattct 243  Q
    |||||||||||||||||||||||||||||||||||||| | ||| | |||||||||||||||||| ||||    
T  20482201 tcaagttttggctaaaaataaagatcttgatagcgaaaca-aaaaaactaatgaattttaaattatttct 20482133  T

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Target: chr6 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 174 - 245
Target Start/End: Original strand, 14539156 - 14539226
Alignment:
Q  174 tcaagttttggctaaaaataaagatcttgatagcgaaaaacaaatacctaatgaattttaaattaattcttt 245  Q
    |||||||||| ||||||||||||||||||||||||||| | ||| | |||||||||||||||||| ||||||    
T  14539156 tcaagttttgactaaaaataaagatcttgatagcgaaaca-aaaaaactaatgaattttaaattatttcttt 14539226  T

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Target: chr4 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 174 - 245
Target Start/End: Original strand, 502647 - 502717
Alignment:
Q  174 tcaagttttggctaaaaataaagatcttgatagcgaaaaacaaatacctaatgaattttaaattaattcttt 245  Q
    |||||||||| ||||||||||||||||||||||||||| | ||| | |||||||||||||||||| ||||||    
T  502647 tcaagttttgactaaaaataaagatcttgatagcgaaaca-aaaaaactaatgaattttaaattatttcttt 502717  T

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Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 174 - 238
Target Start/End: Complemental strand, 1031720 - 1031657
Alignment:
Q  174 tcaagttttggctaaaaataaagatcttgatagcgaaaaacaaatacctaatgaattttaaatta 238  Q
    ||||||||||||||||||||||||||||||| |||||| | ||| | ||||||||||||||||||    
T  1031720 tcaagttttggctaaaaataaagatcttgatggcgaaaca-aaaaaactaatgaattttaaatta 1031657  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 174 - 238
Target Start/End: Complemental strand, 39231109 - 39231046
Alignment:
Q  174 tcaagttttggctaaaaataaagatcttgatagcgaaaaacaaatacctaatgaattttaaatta 238  Q
    |||||||||||||||||| ||||||||||||||||||| | ||| | ||||||||||||||||||    
T  39231109 tcaagttttggctaaaaacaaagatcttgatagcgaaaca-aaaaaactaatgaattttaaatta 39231046  T

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