View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20639_low_18 (Length: 216)
Name: NF20639_low_18
Description: NF20639
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20639_low_18 |
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Alignment Details
Target: chr4 (Bit Score: 143; Significance: 3e-75; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 1 - 198
Target Start/End: Original strand, 54658803 - 54658996
Alignment:
| Q |
1 |
accagcaccgccgtattataaaaccaaacctaatatcagtcagtaataatatagaatagaattattgacgaaaccaaacacaattcttgaaccctttctt |
100 |
Q |
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| T |
54658803 |
accagcaccgccgtattataaaaccaaacctaatataagtcagtaataatatag-----aattattgtcgaaaccaaacacaattcttcaaccctttctt |
54658897 |
T |
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| Q |
101 |
aaccaattaaatcattcttcatcgttttcct-tttctccgtagctgtctgtctacagcgaaggaatgcagagagatgagaggccattgctatcggttct |
198 |
Q |
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||||||||||||||||||||||||||||| | ||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54658898 |
aaccaattaaatcattcttcatcgttttcataattctctgtatctgtctgtctacagcgaaggaatgcagagagatgagaggccattgctatcggttct |
54658996 |
T |
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