View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20639_low_3 (Length: 473)
Name: NF20639_low_3
Description: NF20639
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20639_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 434; Significance: 0; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 434; E-Value: 0
Query Start/End: Original strand, 20 - 461
Target Start/End: Original strand, 34924840 - 34925281
Alignment:
| Q |
20 |
catgcaagatgattaacaaatttccaataattttacattacatccaagtgttataatagacggtacatgggtgagggacttactagagtagagccctcac |
119 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34924840 |
catgcaagatgattaacaaatttccaataattttacattacatccaagtgttataatagacggtacatgggtgagggacttactagagtagagccctcac |
34924939 |
T |
|
| Q |
120 |
cttagaagccacctaacaattcatctataaattgtggtcaaaataacaatccagaacccttgctagaggcgattagaatactgatagaatcaggcaccga |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34924940 |
cttagaagccacctaacaattcatctataaattgtggtcaaaataacaatccagaacccttgctagaggcgattagaatactgatagaatcaggcaccga |
34925039 |
T |
|
| Q |
220 |
acagaaacaaacagattgcacaatacgaatactttattgatgaatataattctggagaatgattaaaaatcagaagtttaaacatagacaaattgcagaa |
319 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||| |
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| T |
34925040 |
acagaaacaaacagattgcacaatacgaatactttattgatgaatataattctggagaatgattcaaaaccagaagtttaaacatagacaaattgcagaa |
34925139 |
T |
|
| Q |
320 |
gttatataggaaatagtacagaataacaagacacacatagaccaagatttgagagcttggttatcaccctcccaagtgtctaacactcacaacttcatga |
419 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34925140 |
gttatataggaaatagtacagaataacaagacacacatagaccaagatttgagagcttggttatcaccctcccaagtgtctaacactcacaacttcatga |
34925239 |
T |
|
| Q |
420 |
taaaactaaacatagtttaattttagttacagcatttagaat |
461 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
34925240 |
taaaactaaacatagtttaattttagttacagcatttagaat |
34925281 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 20 - 461
Target Start/End: Original strand, 34929207 - 34929643
Alignment:
| Q |
20 |
catgcaagatgattaacaaatttccaataattttacattacatccaagtgttataatagacggtacatgggtgagggacttactagagtagagccctcac |
119 |
Q |
| |
|
|||||||| |||||||| ||||||||||||||| |||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| ||||||| |
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|
| T |
34929207 |
catgcaagtcgattaacacatttccaataattttccattacatccaagtgttacaatagacggtacatgggggagggacttactagagtagatccctcac |
34929306 |
T |
|
| Q |
120 |
cttagaagccacctaacaattcatctataaattgtggtcaaaataacaatccagaacccttgctagaggcgattagaatactgatagaatcaggcaccga |
219 |
Q |
| |
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||||||||||| ||||||||||||||||||||||||||||| |||| |||||||||||||||| ||| | |||||||||||||||||||||||||| ||| |
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| T |
34929307 |
cttagaagccagctaacaattcatctataaattgtggtcaagataataatccagaacccttgcaagatgtgattagaatactgatagaatcaggcatcga |
34929406 |
T |
|
| Q |
220 |
acagaaacaaacagattgcacaatacgaatactttattgatgaatataattctggagaatgattaaaaatcagaagtttaaacatagacaaattgcagaa |
319 |
Q |
| |
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|||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||| ||| |||| ||||| || ||||||||||||||||| | |
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| T |
34929407 |
acagaaacaaacagattgcacaatacgaatactt--ttgatgacaataattctggagaataattcaaaaccagaatactacacatagacaaattgcagta |
34929504 |
T |
|
| Q |
320 |
gttatataggaaatagtacagaataacaagacacacatagaccaagatttgagagcttggttatcaccctcccaagtgtctaacactcacaacttcatga |
419 |
Q |
| |
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|| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||| || || ||||||||||||||||| ||| |||||| | || |
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| T |
34929505 |
gtcatataggaaatagtacagaataacaagacacacatagaccaagattcgagagcttgattctctccctcccaagtgtctaatgctcgcaactttagga |
34929604 |
T |
|
| Q |
420 |
taaaactaaacatagtttaattttagttacagcatttagaat |
461 |
Q |
| |
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|||||||| |||||||||||||||| |||| ||| ||||| |
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|
| T |
34929605 |
taaaacta---atagtttaattttagtcacagaattgagaat |
34929643 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 216 - 461
Target Start/End: Original strand, 34934941 - 34935183
Alignment:
| Q |
216 |
ccgaacagaaacaaacagattgcacaatacgaatactttattgatgaatataattctggagaatgattaaaaatcagaagtttaaacatagacaaattgc |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||| |||| ||||| || ||||||||||||||| |
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|
| T |
34934941 |
ccgaacagaaacaaacagattgcacaatacgaatactttattgatgaatataattctggataataattcaaaaccagaatactacacatagacaaattgc |
34935040 |
T |
|
| Q |
316 |
agaagttatataggaaatagtacagaataacaagacacacatagaccaagatttgagagcttggttatcaccctcccaagtgtctaacactcacaacttc |
415 |
Q |
| |
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|| ||| |||||||| ||||||||||||||||||||||||||||||||||||| ||||||||| || || ||||||||||||||||| ||| |||||| |
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| T |
34935041 |
agtagtcatataggagatagtacagaataacaagacacacatagaccaagattcgagagcttgattctctccctcccaagtgtctaatgctcgcaacttt |
34935140 |
T |
|
| Q |
416 |
atgataaaactaaacatagtttaattttagttacagcatttagaat |
461 |
Q |
| |
|
| |||||||||| |||||||||||||||| |||||||| ||||| |
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|
| T |
34935141 |
aggataaaacta---atagtttaattttagtcacagcattgagaat |
34935183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 319 - 436
Target Start/End: Complemental strand, 32683670 - 32683559
Alignment:
| Q |
319 |
agttatataggaaatagtacagaataacaagacacacatagaccaagatttgagagcttggttatcaccctcccaagtgtctaacactcacaacttcatg |
418 |
Q |
| |
|
||||||||||||| |||||| |||||| |||||| |||||| ||||||||| |||||||| || | |||||||||||||| ||||||||||| | | |
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|
| T |
32683670 |
agttatataggaatcagtacataataaccagacacgcataga-caagatttgcgagcttgg----ca-cttcccaagtgtctaaaactcacaacttaagg |
32683577 |
T |
|
| Q |
419 |
ataaaactaaacatagtt |
436 |
Q |
| |
|
||||||| ||||||||| |
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|
| T |
32683576 |
ataaaacagaacatagtt |
32683559 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 319 - 436
Target Start/End: Complemental strand, 32685380 - 32685269
Alignment:
| Q |
319 |
agttatataggaaatagtacagaataacaagacacacatagaccaagatttgagagcttggttatcaccctcccaagtgtctaacactcacaacttcatg |
418 |
Q |
| |
|
||||||||||||| |||||| |||||| |||||| |||||| ||||||||| |||||||| || | |||||||||||||| ||||||||||| | | |
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|
| T |
32685380 |
agttatataggaatcagtacataataaccagacacgcataga-caagatttgcgagcttgg----ca-cttcccaagtgtctaaaactcacaacttaagg |
32685287 |
T |
|
| Q |
419 |
ataaaactaaacatagtt |
436 |
Q |
| |
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||||||| ||||||||| |
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|
| T |
32685286 |
ataaaacagaacatagtt |
32685269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 322 - 351
Target Start/End: Complemental strand, 28699374 - 28699345
Alignment:
| Q |
322 |
tatataggaaatagtacagaataacaagac |
351 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
28699374 |
tatataggaaatagtacagaataacaagac |
28699345 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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