View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20639_low_8 (Length: 361)
Name: NF20639_low_8
Description: NF20639
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20639_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 305; Significance: 1e-171; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 14 - 346
Target Start/End: Original strand, 22362335 - 22362667
Alignment:
| Q |
14 |
atatgcatttcggaaatcaggttttctatcataaagattgtaagagtcaggggaatcagctctgtctttattctctatcttcttcttctcttttcctaat |
113 |
Q |
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| T |
22362335 |
atatgcatttcggaaatcaggttttctatcatagagattgtaagagtcaggggaatcagctctgtctttattctctatcttcttcttctcttttcctaat |
22362434 |
T |
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| Q |
114 |
acatttttcatgagctttctccatgaccaacttgtttgcttctcctcttcctcttcttcttgtctttgtaccaatgtcttaaggtgttgcactttgttat |
213 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
22362435 |
acatttttcatgagcttcctccatgaccaacttgtttgcttctcctcttcctcttcttcttgtctttgtaccaatgtcttaaggtgttgcactttgtcat |
22362534 |
T |
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| Q |
214 |
tcttcttcagttcaaggaatttggtccatagactaggagaatgagaatcatcatcaatgaacacaattggaccatcttgtttcttggtgaaaattctctc |
313 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
22362535 |
tcttcttcagttcaaggaatttggtccatagactaggagaatgagaatcatcatcaatgaacacaattggaccatcttgtttcttggtgaagattctctc |
22362634 |
T |
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| Q |
314 |
tatcattgctcttgattcctataagtgataatt |
346 |
Q |
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|||| ||| |||||||||||||||||| ||||| |
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| T |
22362635 |
tatctttgttcttgattcctataagtggtaatt |
22362667 |
T |
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