View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2063_high_12 (Length: 273)
Name: NF2063_high_12
Description: NF2063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2063_high_12 |
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Alignment Details
Target: chr4 (Bit Score: 198; Significance: 1e-108; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 11 - 259
Target Start/End: Original strand, 54779169 - 54779414
Alignment:
| Q |
11 |
agaatatgaattatttgaacgtaatcacatgtgtcagtgtcatgttagtgtccgacaccgaccgacaagtgtgggacacgcctttgatcagaggtgtgtg |
110 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54779169 |
agaaaatgaattatttgaacgtaatcacatgtgtcagtgtcatgttagtgtccgacaccgaccgacaagtgtgggacacgcctttgatcagaggtgtgtg |
54779268 |
T |
|
| Q |
111 |
ccacaaagaaagaaagaccggttgaaactaggcaaaataataatatacaaataaaagaccttataatactctagttcctatcacaaaaatgcagagctaa |
210 |
Q |
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|||||||||||||||||| ||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54779269 |
ccacaaagaaagaaagactggttgaaactagg---aaacataatatacaaataaaagaccttataatactctagttcctatcacaaaaatgcagagctaa |
54779365 |
T |
|
| Q |
211 |
gaatgggaaggaatnnnnnnncagcatttaaactttcacacataggtat |
259 |
Q |
| |
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|||||||||||||| |||||||||||||||||||||||||||| |
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| T |
54779366 |
gaatgggaaggaataaaaaaacagcatttaaactttcacacataggtat |
54779414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 18 - 219
Target Start/End: Complemental strand, 52282625 - 52282415
Alignment:
| Q |
18 |
gaattatttgaacgtaatcacatgtgtcagtgtcatgttagtgtccgacaccgaccgacaagtgtgggacac-------gcctttgatcagaggtgt--g |
108 |
Q |
| |
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|||||||||| || ||||||||||||||||| || ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| | |
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| T |
52282625 |
gaattatttgtacataatcacatgtgtcagtttcgtgttagtgtccgacaccgaccgacaagtgtgggacactgaacacgcctttgatcagaggtgttgg |
52282526 |
T |
|
| Q |
109 |
tgccacaaagaaagaaagaccggttgaaactaggcaaaataataatatacaaataaaagaccttataatactctagttcctatcacaaaaatgcagagct |
208 |
Q |
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||||||| || ||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||| |
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| T |
52282525 |
tgccacagagtaagaaagactggttgaaactaggaaaaataataatatacaaataaaagaccttataataccctagttgctatcacaaaaatgcagagct |
52282426 |
T |
|
| Q |
209 |
aagaatgggaa |
219 |
Q |
| |
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| ||||||||| |
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| T |
52282425 |
aggaatgggaa |
52282415 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 11 - 220
Target Start/End: Complemental strand, 54789978 - 54789784
Alignment:
| Q |
11 |
agaatatgaattatttgaacgtaatcacatgtgtcagtgtcatgttagtgtccgacaccgaccgacaagtgtgggacacgcctttgatcagaggtgt--g |
108 |
Q |
| |
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|||| ||||||||||||||||||| ||||||||||| |||| ||||||||| |||||||||||||| || ||||||||||| | |
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| T |
54789978 |
agaacatgaattatttgaacgtaaccacatgtgtcaatgtcgtgttagtgttggacaccgaccgaca---gt--------------atcagaggtgttgg |
54789896 |
T |
|
| Q |
109 |
tgccacaaagaaagaaagaccggttgaaactaggcaaaataataatatacaaataaaagaccttataatactctagttcctatcacaaaaatgcagagct |
208 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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|
| T |
54789895 |
tgccacaaagaaagaaagactggttgaaactaggcaaaataataatatacaaataaaagaccttataataccctagttcctatcacaaaaatgcagagct |
54789796 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 11 - 43
Target Start/End: Complemental strand, 843182 - 843150
Alignment:
| Q |
11 |
agaatatgaattatttgaacgtaatcacatgtg |
43 |
Q |
| |
|
|||| |||||||||||||||||||||||||||| |
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|
| T |
843182 |
agaaaatgaattatttgaacgtaatcacatgtg |
843150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 104; Significance: 6e-52; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 11 - 220
Target Start/End: Complemental strand, 19296019 - 19295825
Alignment:
| Q |
11 |
agaatatgaattatttgaacgtaatcacatgtgtcagtgtcatgttagtgtccgacaccgaccgacaagtgtgggacacgcctttgatcagaggtgt--g |
108 |
Q |
| |
|
|||| ||||||||||||||||||| ||||||||||| |||| ||||||||| |||||||||||||| || ||||||||||| | |
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| T |
19296019 |
agaacatgaattatttgaacgtaaccacatgtgtcaatgtcgtgttagtgttggacaccgaccgaca---gt--------------atcagaggtgttgg |
19295937 |
T |
|
| Q |
109 |
tgccacaaagaaagaaagaccggttgaaactaggcaaaataataatatacaaataaaagaccttataatactctagttcctatcacaaaaatgcagagct |
208 |
Q |
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|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
19295936 |
tgccacaaagaaagaaagactggttgaaactaggcaaaataataatatacaaataaaagaccttataataccctagttcctatcacaaaaatgcagagct |
19295837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 11 - 71
Target Start/End: Complemental strand, 22745586 - 22745526
Alignment:
| Q |
11 |
agaatatgaattatttgaacgtaatcacatgtgtcagtgtcatgttagtgtccgacaccga |
71 |
Q |
| |
|
|||| ||||||||||| |||||||| |||||| ||||||||||||| ||||| |||||||| |
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|
| T |
22745586 |
agaaaatgaattatttaaacgtaatgacatgtttcagtgtcatgttggtgtcggacaccga |
22745526 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 17 - 52
Target Start/End: Complemental strand, 21186666 - 21186631
Alignment:
| Q |
17 |
tgaattatttgaacgtaatcacatgtgtcagtgtca |
52 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||| |
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| T |
21186666 |
tgaattatttgaacgtaatcacatgtgtcggtgtca |
21186631 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 11 - 55
Target Start/End: Complemental strand, 9878073 - 9878029
Alignment:
| Q |
11 |
agaatatgaattatttgaacgtaatcacatgtgtcagtgtcatgt |
55 |
Q |
| |
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||||||||||||| ||||| |||||||| |||||||||| ||||| |
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|
| T |
9878073 |
agaatatgaattaattgaatgtaatcacttgtgtcagtgccatgt |
9878029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 16 - 52
Target Start/End: Original strand, 28525031 - 28525067
Alignment:
| Q |
16 |
atgaattatttgaacgtaatcacatgtgtcagtgtca |
52 |
Q |
| |
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|||||||| ||||| |||||||||||||||||||||| |
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| T |
28525031 |
atgaattaattgaatgtaatcacatgtgtcagtgtca |
28525067 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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