View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2063_high_15 (Length: 262)

Name: NF2063_high_15
Description: NF2063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2063_high_15
NF2063_high_15
[»] chr1 (9 HSPs)
chr1 (1-124)||(35692505-35692628)
chr1 (149-251)||(35692878-35692980)
chr1 (18-59)||(47372201-47372242)
chr1 (2-62)||(10303135-10303195)
chr1 (18-73)||(25655313-25655368)
chr1 (1-71)||(36982375-36982445)
chr1 (23-81)||(38068386-38068444)
chr1 (37-87)||(40536967-40537016)
chr1 (18-71)||(32883621-32883674)
[»] chr4 (5 HSPs)
chr4 (37-83)||(4709997-4710043)
chr4 (2-61)||(22189449-22189508)
chr4 (37-86)||(3649082-3649131)
chr4 (37-70)||(29597529-29597562)
chr4 (19-83)||(41335713-41335777)
[»] chr3 (3 HSPs)
chr3 (2-73)||(38331149-38331220)
chr3 (2-66)||(22288256-22288320)
chr3 (2-72)||(50518604-50518674)
[»] chr2 (5 HSPs)
chr2 (1-72)||(17672651-17672722)
chr2 (1-72)||(17183760-17183830)
chr2 (1-72)||(17627579-17627650)
chr2 (2-83)||(29995462-29995542)
chr2 (37-73)||(17981554-17981590)
[»] chr8 (3 HSPs)
chr8 (22-73)||(44639024-44639075)
chr8 (2-73)||(28377679-28377750)
chr8 (2-67)||(30936025-30936090)
[»] chr7 (5 HSPs)
chr7 (18-88)||(35707883-35707953)
chr7 (1-70)||(4059745-4059813)
chr7 (1-68)||(24512646-24512713)
chr7 (36-81)||(37816564-37816609)
chr7 (36-88)||(2871009-2871061)
[»] chr6 (3 HSPs)
chr6 (18-83)||(21910242-21910307)
chr6 (2-70)||(2781059-2781127)
chr6 (15-59)||(31107556-31107600)
[»] chr5 (5 HSPs)
chr5 (2-83)||(30785025-30785106)
chr5 (2-59)||(12682656-12682713)
chr5 (23-71)||(13670192-13670240)
chr5 (29-81)||(15386143-15386195)
chr5 (19-87)||(35914460-35914527)


Alignment Details
Target: chr1 (Bit Score: 88; Significance: 2e-42; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 124
Target Start/End: Original strand, 35692505 - 35692628
Alignment:
Q  1 tttaaccaatgtcttgagttcgaatccaacattgaacatgcaacaacattaaaactcttagagagagtttgccactcatttagatcctcaattagtccaa 100  Q
    ||||||||||||||||||||||||||||||||||  |||||||| || ||||||||||||| ||||||||||| ||||||||| ||||||||||||||||    
T  35692505 tttaaccaatgtcttgagttcgaatccaacattgggcatgcaacgacgttaaaactcttagggagagtttgccgctcatttaggtcctcaattagtccaa 35692604  T
Q  101 gaaagttgcttgcagaggataccc 124  Q
    |||||||||  |||||||||||||    
T  35692605 gaaagttgcgcgcagaggataccc 35692628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 149 - 251
Target Start/End: Original strand, 35692878 - 35692980
Alignment:
Q  149 gcatttacatgcattaattaatctgattggttgattagagatcaattgactcacattacacatttg-ctagatcatatcatatttaaaataatttacgcc 247  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | ||||||| |||| | ||||||||||||||    
T  35692878 gcatttacatgcattaattaatctgattggttgattagagatcaattgactcacattacacatttgccaaaatcatattatatgt-aaataatttacgcc 35692976  T
Q  248 aata 251  Q
    ||||    
T  35692977 aata 35692980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 18 - 59
Target Start/End: Complemental strand, 47372242 - 47372201
Alignment:
Q  18 gttcgaatccaacattgaacatgcaacaacattaaaactctt 59  Q
    ||||||||||||||||  ||||||||||||||||||||||||    
T  47372242 gttcgaatccaacattatacatgcaacaacattaaaactctt 47372201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 62
Target Start/End: Original strand, 10303135 - 10303195
Alignment:
Q  2 ttaaccaatgtcttgagttcgaatccaacattgaacatgcaacaacattaaaactcttaga 62  Q
    ||||| || |||||||||||||||||| | ||  |||||||||||| ||||||||||||||    
T  10303135 ttaactaaagtcttgagttcgaatccagctttagacatgcaacaacgttaaaactcttaga 10303195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 18 - 73
Target Start/End: Complemental strand, 25655368 - 25655313
Alignment:
Q  18 gttcgaatccaacattgaacatgcaacaacattaaaactcttagagagagtttgcc 73  Q
    ||||||||  |||||||  |||||| |||| |||||||||||||||||||||||||    
T  25655368 gttcgaatttaacattgggcatgcagcaacgttaaaactcttagagagagtttgcc 25655313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 36982375 - 36982445
Alignment:
Q  1 tttaaccaatgtcttgagttcgaatccaacattgaacatgcaacaacattaaaactcttagagagagtttg 71  Q
    ||||||||| |||| | |||||||| || | ||  |||||||||||| ||||||||||||| |||||||||    
T  36982375 tttaaccaaggtctcgggttcgaattcagccttagacatgcaacaacgttaaaactcttagggagagtttg 36982445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 81
Target Start/End: Original strand, 38068386 - 38068444
Alignment:
Q  23 aatccaacattgaacatgcaacaacattaaaactcttagagagagtttgccactcattt 81  Q
    |||||||| ||||||||||| || | |||||||||||| ||||||||| || |||||||    
T  38068386 aatccaaccttgaacatgcagcatcgttaaaactcttatagagagtttcccgctcattt 38068444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 87
Target Start/End: Original strand, 40536967 - 40537016
Alignment:
Q  37 catgcaacaacattaaaactcttagagagagtttgccactcatttagatcc 87  Q
    ||||||||||| |||||||||||| |||||||||||| | |||||||||||    
T  40536967 catgcaacaacgttaaaactcttaaagagagtttgccgc-catttagatcc 40537016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 18 - 71
Target Start/End: Complemental strand, 32883674 - 32883621
Alignment:
Q  18 gttcgaatccaacattgaacatgcaacaacattaaaactcttagagagagtttg 71  Q
    ||||||||||| ||||| ||||||| || | ||||||||||||| |||||||||    
T  32883674 gttcgaatccagcattggacatgcagcagcgttaaaactcttagggagagtttg 32883621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 37 - 83
Target Start/End: Complemental strand, 4710043 - 4709997
Alignment:
Q  37 catgcaacaacattaaaactcttagagagagtttgccactcatttag 83  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||    
T  4710043 catgcaacaacgttaaaactcttagagagagtttgccactcatttag 4709997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 2 - 61
Target Start/End: Complemental strand, 22189508 - 22189449
Alignment:
Q  2 ttaaccaatgtcttgagttcgaatccaacattgaacatgcaacaacattaaaactcttag 61  Q
    |||||||| |||  ||||||||||||||| |||  |||||| ||||||||||||||||||    
T  22189508 ttaaccaaggtccagagttcgaatccaaccttgtgcatgcagcaacattaaaactcttag 22189449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 37 - 86
Target Start/End: Complemental strand, 3649131 - 3649082
Alignment:
Q  37 catgcaacaacattaaaactcttagagagagtttgccactcatttagatc 86  Q
    ||||||||||| ||||||||||||| |||||||| || ||||||| ||||    
T  3649131 catgcaacaacgttaaaactcttagggagagttttccgctcatttggatc 3649082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 37 - 70
Target Start/End: Original strand, 29597529 - 29597562
Alignment:
Q  37 catgcaacaacattaaaactcttagagagagttt 70  Q
    ||||||||||| ||||||||||||||||||||||    
T  29597529 catgcaacaacgttaaaactcttagagagagttt 29597562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 83
Target Start/End: Complemental strand, 41335777 - 41335713
Alignment:
Q  19 ttcgaatccaacattgaacatgcaacaacattaaaactcttagagagagtttgccactcatttag 83  Q
    |||||||| | ||||| ||||||| |||| |||||| |||||||||||| || ||| ||||||||    
T  41335777 ttcgaatctagcattggacatgcagcaacgttaaaaatcttagagagagcttaccattcatttag 41335713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 2 - 73
Target Start/End: Original strand, 38331149 - 38331220
Alignment:
Q  2 ttaaccaatgtcttgagttcgaatccaacattgaacatgcaacaacattaaaactcttagagagagtttgcc 73  Q
    |||||||||||| |||||| ||||||||| |||| |||||| || | ||||||||||||||||||| |||||    
T  38331149 ttaaccaatgtcctgagtttgaatccaactttgagcatgcagcagcgttaaaactcttagagagagcttgcc 38331220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 66
Target Start/End: Original strand, 22288256 - 22288320
Alignment:
Q  2 ttaaccaatgtcttgagttcgaatccaacattgaacatgcaacaacattaaaactcttagagaga 66  Q
    |||||||| ||| ||||||||||| || | |||||||||||||||  ||||||||||||| ||||    
T  22288256 ttaaccaaagtcctgagttcgaattcagccttgaacatgcaacaatgttaaaactcttagggaga 22288320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 72
Target Start/End: Complemental strand, 50518674 - 50518604
Alignment:
Q  2 ttaaccaatgtcttgagttcgaatccaacattgaacatgcaacaacattaaaactcttagagagagtttgc 72  Q
    ||||| |||||| || |||||||| ||   ||| |||||||||||| || |||||||||||||||||||||    
T  50518674 ttaactaatgtcatgtgttcgaattcagtcttggacatgcaacaacgttgaaactcttagagagagtttgc 50518604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 17672651 - 17672722
Alignment:
Q  1 tttaaccaatgtcttgagttcgaatccaacattgaacatgcaacaacattaaaactcttagagagagtttgc 72  Q
    ||||||||| ||| |||||||||||||||| |||  ||||||||||| |||||| |||||| ||||||||||    
T  17672651 tttaaccaaggtcctgagttcgaatccaaccttgggcatgcaacaacgttaaaattcttagggagagtttgc 17672722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 17183830 - 17183760
Alignment:
Q  1 tttaaccaatgtcttgagttcgaatccaacattgaacatgcaacaacattaaaactcttagagagagtttgc 72  Q
    |||||||||||||||| | ||||||||||  |||| |||| || | | ||||||||||||||||||||||||    
T  17183830 tttaaccaatgtcttg-gatcgaatccaatcttgagcatgtaatagcgttaaaactcttagagagagtttgc 17183760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 17627579 - 17627650
Alignment:
Q  1 tttaaccaatgtcttgagttcgaatccaacattgaacatgcaacaacattaaaactcttagagagagtttgc 72  Q
    ||||||||| ||| |||||||||||||| | |||  ||||||||||| |||||| |||||| || |||||||    
T  17627579 tttaaccaaggtcctgagttcgaatccagccttgggcatgcaacaacgttaaaattcttagggaaagtttgc 17627650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 2 - 83
Target Start/End: Complemental strand, 29995542 - 29995462
Alignment:
Q  2 ttaaccaatgtcttgagttcgaatccaacattgaacatgcaacaacattaaaactcttagagagagtttgccactcatttag 83  Q
    |||| ||| ||| |||||||||||||| ||||||| |||||||||| |||||| | |||  ||||||||| || ||||||||    
T  29995542 ttaagcaaagtcctgagttcgaatccagcattgaaaatgcaacaacgttaaaa-ttttaaggagagtttgtcattcatttag 29995462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 37 - 73
Target Start/End: Original strand, 17981554 - 17981590
Alignment:
Q  37 catgcaacaacattaaaactcttagagagagtttgcc 73  Q
    ||||||||||||||||||||||||| ||||| |||||    
T  17981554 catgcaacaacattaaaactcttagggagagcttgcc 17981590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 22 - 73
Target Start/End: Original strand, 44639024 - 44639075
Alignment:
Q  22 gaatccaacattgaacatgcaacaacattaaaactcttagagagagtttgcc 73  Q
    ||||||||| |||| ||||||||||| ||||||||||||| |||||||||||    
T  44639024 gaatccaaccttgagcatgcaacaacgttaaaactcttagggagagtttgcc 44639075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 2 - 73
Target Start/End: Original strand, 28377679 - 28377750
Alignment:
Q  2 ttaaccaatgtcttgagttcgaatccaacattgaacatgcaacaacattaaaactcttagagagagtttgcc 73  Q
    |||| ||| ||| |||||||||||||| ||||   |||||| ||||||||||| |||||| |||||||||||    
T  28377679 ttaatcaaagtcatgagttcgaatccagcattaggcatgcagcaacattaaaattcttagggagagtttgcc 28377750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 2 - 67
Target Start/End: Original strand, 30936025 - 30936090
Alignment:
Q  2 ttaaccaatgtcttgagttcgaatccaacattgaacatgcaacaacattaaaactcttagagagag 67  Q
    |||||||| ||| |||||||||||||| | || | |||||| |||| ||||||||||||| |||||    
T  30936025 ttaaccaaggtcctgagttcgaatccagccttaagcatgcagcaacgttaaaactcttagggagag 30936090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.00000000009; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 18 - 88
Target Start/End: Original strand, 35707883 - 35707953
Alignment:
Q  18 gttcgaatccaacattgaacatgcaacaacattaaaactcttagagagagtttgccactcatttagatcct 88  Q
    ||||||||||||| ||| |||||||||||| |||||| |||||| ||||  ||||| | ||||||||||||    
T  35707883 gttcgaatccaactttggacatgcaacaacgttaaaattcttagggagaacttgcctcccatttagatcct 35707953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 4059813 - 4059745
Alignment:
Q  1 tttaaccaatgtcttgagttcgaatccaacattgaacatgcaacaacattaaaactcttagagagagttt 70  Q
    ||||||||| |||| |||||||||| || | |||| ||||||||| | ||||||||||||||||||||||    
T  4059813 tttaaccaaggtct-gagttcgaatacagccttgagcatgcaacatcgttaaaactcttagagagagttt 4059745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 24512646 - 24512713
Alignment:
Q  1 tttaaccaatgtcttgagttcgaatccaacattgaacatgcaacaacattaaaactcttagagagagt 68  Q
    ||||||||||||| ||| ||||||| |||| ||| |||| ||||||| ||||||||||| | ||||||    
T  24512646 tttaaccaatgtcctgaattcgaatacaaccttggacatccaacaacgttaaaactcttggggagagt 24512713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 36 - 81
Target Start/End: Original strand, 37816564 - 37816609
Alignment:
Q  36 acatgcaacaacattaaaactcttagagagagtttgccactcattt 81  Q
    |||| ||||||||||||||||||||| ||||||||  |||||||||    
T  37816564 acatacaacaacattaaaactcttagggagagtttatcactcattt 37816609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 36 - 88
Target Start/End: Complemental strand, 2871061 - 2871009
Alignment:
Q  36 acatgcaacaacattaaaactcttagagagagtttgccactcatttagatcct 88  Q
    |||||||||||  ||||||||||| ||||||||||| | ||||||||| ||||    
T  2871061 acatgcaacaatgttaaaactcttggagagagtttgtcgctcatttaggtcct 2871009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 18 - 83
Target Start/End: Original strand, 21910242 - 21910307
Alignment:
Q  18 gttcgaatccaacattgaacatgcaacaacattaaaactcttagagagagtttgccactcatttag 83  Q
    ||||||||||| | |||  ||||||||| | |||||||||||||||||||| |||| |||||||||    
T  21910242 gttcgaatccagccttgggcatgcaacatcgttaaaactcttagagagagtctgccgctcatttag 21910307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 2 - 70
Target Start/End: Complemental strand, 2781127 - 2781059
Alignment:
Q  2 ttaaccaatgtcttgagttcgaatccaacattgaacatgcaacaacattaaaactcttagagagagttt 70  Q
    |||||||||||  ||| |||||||| |||||||||||| || |||| |||||| ||||| | |||||||    
T  2781127 ttaaccaatgttctgaattcgaatctaacattgaacatccatcaacgttaaaattcttaaaaagagttt 2781059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 15 - 59
Target Start/End: Complemental strand, 31107600 - 31107556
Alignment:
Q  15 tgagttcgaatccaacattgaacatgcaacaacattaaaactctt 59  Q
    |||||||||||||| ||||| |||||||||| | |||||||||||    
T  31107600 tgagttcgaatccagcattggacatgcaacagcgttaaaactctt 31107556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 2 - 83
Target Start/End: Complemental strand, 30785106 - 30785025
Alignment:
Q  2 ttaaccaatgtcttgagttcgaatccaacattgaacatgcaacaacattaaaactcttagagagagtttgccactcatttag 83  Q
    |||| |||||||||| ||||||||||| | ||| ||||||| |||| ||||||||||||| |||| | |||||  |||||||    
T  30785106 ttaatcaatgtcttgggttcgaatccagctttggacatgcagcaacgttaaaactcttagggagaatctgccatccatttag 30785025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 2 - 59
Target Start/End: Original strand, 12682656 - 12682713
Alignment:
Q  2 ttaaccaatgtcttgagttcgaatccaacattgaacatgcaacaacattaaaactctt 59  Q
    |||| ||||||  |||||||||||||| | |||| ||||||||||| |||||||||||    
T  12682656 ttaagcaatgttctgagttcgaatccagccttgagcatgcaacaacgttaaaactctt 12682713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 23 - 71
Target Start/End: Complemental strand, 13670240 - 13670192
Alignment:
Q  23 aatccaacattgaacatgcaacaacattaaaactcttagagagagtttg 71  Q
    |||| |||||||| ||||||||||||| |||||||||| | ||||||||    
T  13670240 aatctaacattgagcatgcaacaacatgaaaactcttaaaaagagtttg 13670192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 29 - 81
Target Start/End: Complemental strand, 15386195 - 15386143
Alignment:
Q  29 acattgaacatgcaacaacattaaaactcttagagagagtttgccactcattt 81  Q
    ||||||| |||||| |||| |||||| ||||||  ||||||||||||||||||    
T  15386195 acattgagcatgcatcaacgttaaaattcttaggaagagtttgccactcattt 15386143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 87
Target Start/End: Original strand, 35914460 - 35914527
Alignment:
Q  19 ttcgaatccaacattgaacatgcaacaacattaaaactcttagagagagtttgccactcatttagatcc 87  Q
    ||||||||||||||||  ||||||||||| || | |||||||| |||||||| |||| |||||| ||||    
T  35914460 ttcgaatccaacattgggcatgcaacaacgtt-acactcttagggagagttttccacccatttaaatcc 35914527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University