View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2063_high_2 (Length: 601)
Name: NF2063_high_2
Description: NF2063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2063_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 416; Significance: 0; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 23 - 599
Target Start/End: Complemental strand, 11859646 - 11859064
Alignment:
| Q |
23 |
tcgctacgatcacaatcaaaagaggaactccaccacaaccctccacgatctcccgttcatgttca------ggttcaatggtgctttgttcttttttggc |
116 |
Q |
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|||||||||||||||||||||||||||||||| ||||||| ||||| |||||||||||| ||||| |||||| |||||||||| ||||||||| |
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| T |
11859646 |
tcgctacgatcacaatcaaaagaggaactccagcacaaccttccacaatctcccgttcaggttcacgttcgggttcagtggtgctttgcacttttttggt |
11859547 |
T |
|
| Q |
117 |
tgaagtaattggtccatgaatctgctgaaacaatgaccaagattcctcctgattaagctcctccaatttcaaaacaagtctagtagcaatgtcgttggca |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||| ||| ||||||||| |||||| |||||| | ||||||| |
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| T |
11859546 |
tgaagtaattggtccatgaatctgctgaaacaatgaccaagattcctcttgattaagcccctgcaacttcaaaacatgtctagcagcaattttgttggca |
11859447 |
T |
|
| Q |
217 |
acatggttgcttcgtgttgttgtaacaagtatcgcggtatcagtccttccgccagcagcctccattaatttcttctgcaacttcttgagatcatcattct |
316 |
Q |
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| T |
11859446 |
acatggctgcttcgtgttgttgtaacaagtatgacggtatcagtccttccacctgcagcctgcgctaatttcttctgcaacttctcgagatcaccattct |
11859347 |
T |
|
| Q |
317 |
taatctcaattcgcaaatcatctataacaagtaagatgcgtttctcatgatcagactgatcagtaacacattttactatggattcaacatcaaattggtg |
416 |
Q |
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| T |
11859346 |
caatctcaattcgcaaatcatctataacaagtaagacgcgtttcttatgaacataccgatcagtaacgctttttactatggattcaacatcaaattggtg |
11859247 |
T |
|
| Q |
417 |
atgagggccattgatccaaattgcttggaaaccagaactccctttgacttgctcatcttcacaaacgagacgagcaagttttgttttgccaattccagga |
516 |
Q |
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| T |
11859246 |
atgaagaccattgatccaaattgcttggaaaccagaactccctttgacttgctcatcttcacaaacgagacgagcaagttttgttttgccaattccagga |
11859147 |
T |
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| Q |
517 |
acaccaacaatagcaattacaaaaggaacagcagtatcaaccttgttcatcttcagcagtttatctataatctccttcttctc |
599 |
Q |
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| T |
11859146 |
acaccaacaatagcaattacaaaaggaacagcagtatcaaccttgttcatcttcagcagtttatctataatctccttcttctc |
11859064 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 129 - 600
Target Start/End: Complemental strand, 12038317 - 12037861
Alignment:
| Q |
129 |
tccatgaatctgctgaaacaatgaccaagattcctcctgattaagctcctccaatttcaaaacaagtctagtagcaatgtcgttggcaacatggttgctt |
228 |
Q |
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| T |
12038317 |
tccatgaatttcctcaaacaaggaccaagaatcctcttgattaagcccctgcaacttcaaaacatgtccagcagcaatgttgtcggcgacatggttacta |
12038218 |
T |
|
| Q |
229 |
cgtgttgttgtaacaagtatcgcggtatcagtccttccgccagcagcctccattaatttcttctgcaacttcttgagatcatcattct---taatctcaa |
325 |
Q |
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| T |
12038217 |
cgtgtagt---aatgagtatggccgtatcagcacggccaccaacagcttcagttaatttcttctgcaacttctcaagataatcaggctcattaatctcaa |
12038121 |
T |
|
| Q |
326 |
ttcgcaaatcatctataacaagtaagatgcgtttctcatgatcagactgatcagtaacacattttactatggattcaacatcaaattggtgatgagggcc |
425 |
Q |
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|| ||||||||||||||||||||||| |||||||||||||| ||||| | | ||||| |||| |||| |||||||||||||| ||| |
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| T |
12038120 |
atctcaaatcatctataacaagtaagaggcgtttctcatgatgagact---cggcaacactttttgctatagattcaacatcaaa--ggtt--------- |
12038035 |
T |
|
| Q |
426 |
attgatccaaattgcttggaaaccagaactccctttgacttgctcatcttcacaaacgagacgagcaagttttgttttgccaattccaggaacaccaaca |
525 |
Q |
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| T |
12038034 |
-ttgatccaaattggttgtaacccaaaattcatttcgacttgctcatcctcacaaacgagatgagcaagttttgttttgccaattccaggaacaccaaca |
12037936 |
T |
|
| Q |
526 |
atagcaattacaaaaggaacagcagtatcaaccttgttcatcttcagcagtttatctataatctccttcttctca |
600 |
Q |
| |
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||| |||| |||| ||||||||||| |||| || |||| |||| |||||||||||||| ||| | ||||||| |
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| T |
12037935 |
ataacaataacaacaggaacagcagcatcagtgttcttcaggttcaccagtttatctataagctcttccttctca |
12037861 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 88 - 351
Target Start/End: Complemental strand, 11827434 - 11827171
Alignment:
| Q |
88 |
ggttcaatggtgctttgttcttttttggctgaagtaattggtccatgaatctgctgaaacaatgaccaagattcctcctgattaagctcctccaatttca |
187 |
Q |
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||||| |||||||||||| ||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||| ||| ||| |||| |
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| T |
11827434 |
ggttcgatggtgctttgtgcttttttggttgaagtaattggtccataaatctgctgaaacaatgaccaagattccttttgattaagcccctgcaacttca |
11827335 |
T |
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| Q |
188 |
aaacaagtctagtagcaatgtcgttggcaacatggttgcttcgtgttgttgtaacaagtatcgcggtatcagtccttccgccagcagcctccattaattt |
287 |
Q |
| |
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||||| | ||| | |||| | |||||| ||||||||||| | ||| |||| |||||| |||||| || | || |||||| ||||||| ||||| |
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| T |
11827334 |
aaacatatgtagcaccaatattgttggcgacatggttgctac---atgtggtaatgagtatcacggtattggtacggccaccagcaacctccatcaattt |
11827238 |
T |
|
| Q |
288 |
cttctgcaacttcttgagatcatca---ttcttaatctcaattcgcaaatcatctataacaagtaag |
351 |
Q |
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| T |
11827237 |
cttctgtaacttctcgaggtcatcatgcttattaatcgcaattctcaaatcatctataataagtaag |
11827171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 458 - 550
Target Start/End: Complemental strand, 11827037 - 11826945
Alignment:
| Q |
458 |
ctttgacttgctcatcttcacaaacgagacgagcaagttttgttttgccaattccaggaacaccaacaatagcaattacaaaaggaacagcag |
550 |
Q |
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||||||||||||| || |||||||||||| |||||||||||||||| |||||||||| |||||||||||||||||| | || ||||||||||| |
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| T |
11827037 |
ctttgacttgctcgtcctcacaaacgagatgagcaagttttgttttcccaattccagtaacaccaacaatagcaataaaaacaggaacagcag |
11826945 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 429 - 527
Target Start/End: Original strand, 11903281 - 11903379
Alignment:
| Q |
429 |
gatccaaattgcttggaaaccagaactccctttgacttgctcatcttcacaaacgagacgagcaagttttgttttgccaattccaggaacaccaacaat |
527 |
Q |
| |
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||||||||||| || ||||||| || |||||||||| |||||||| ||||| |||| |||||||||||||| ||||||||||||||||||||||| |
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| T |
11903281 |
gatccaaattggttcgaaaccaaaatgagctttgacttgttcatcttcgcaaacaagacttgcaagttttgttttcccaattccaggaacaccaacaat |
11903379 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 458 - 527
Target Start/End: Complemental strand, 11730895 - 11730826
Alignment:
| Q |
458 |
ctttgacttgctcatcttcacaaacgagacgagcaagttttgttttgccaattccaggaacaccaacaat |
527 |
Q |
| |
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| T |
11730895 |
ctttgacttgctcatcctcgcaaacaagccgtgcaagttttgtcttccctattcccggaacaccaacaat |
11730826 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 458 - 527
Target Start/End: Complemental strand, 11730451 - 11730382
Alignment:
| Q |
458 |
ctttgacttgctcatcttcacaaacgagacgagcaagttttgttttgccaattccaggaacaccaacaat |
527 |
Q |
| |
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|||||||||||||||| | ||||| ||||| ||||||||||| || || ||||| | |||||||||||| |
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| T |
11730451 |
ctttgacttgctcatccttgcaaacaagacgtgcaagttttgtctttcctattcctgaaacaccaacaat |
11730382 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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