View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2063_high_21 (Length: 221)
Name: NF2063_high_21
Description: NF2063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2063_high_21 |
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Alignment Details
Target: chr4 (Bit Score: 104; Significance: 5e-52; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 14 - 149
Target Start/End: Original strand, 8949107 - 8949245
Alignment:
| Q |
14 |
aagaaaaaacagagctagatatttatgtagaaaaacgaca--gtctcttgtgcggctttagatagggagataagatttggag-aaaaagagagatgagcg |
110 |
Q |
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| T |
8949107 |
aagaaaaaacagagctagatatttatgtaaaaaaacgacattgtctcttgtgcggctttagatagggagataagatttggagaaaaaagagagatgagcg |
8949206 |
T |
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| Q |
111 |
agatttggagataagatttggacagatatatattttatc |
149 |
Q |
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| T |
8949207 |
agatttggagataagattttaaaagatatatattttatc |
8949245 |
T |
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Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 165 - 204
Target Start/End: Original strand, 55339428 - 55339467
Alignment:
| Q |
165 |
cagaagtaattcatctcgcacaaggtgtataaaagagaat |
204 |
Q |
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| T |
55339428 |
cagaagtaattcatctcgcacaaggtgtgcaaaagagaat |
55339467 |
T |
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