View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2063_high_22 (Length: 220)
Name: NF2063_high_22
Description: NF2063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2063_high_22 |
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Alignment Details
Target: chr7 (Bit Score: 183; Significance: 4e-99; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 15 - 201
Target Start/End: Complemental strand, 4560391 - 4560205
Alignment:
| Q |
15 |
caaaggtaaagataactatagttttactctttgaaaaatgttggcaaaaaccattaataacatatgattatgaatgcaggaaaagaatcaaaagattgca |
114 |
Q |
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| T |
4560391 |
caaaggtaaagataactatagttttactatttgaaaaatgttggcaaaaaccattaataacatatgattatgaatgcaggaaaagaatcaaaagattgca |
4560292 |
T |
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| Q |
115 |
aaagagaagcaacaattctccacagaatcatcagtaacttctgtctcttcatcatcttgttcatctagcatgacatcctatgaattt |
201 |
Q |
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| T |
4560291 |
aaagagaagcaacaattctccacagaatcatcagtaacttctgtctcttcatcatcttgttcatctagcatgacatcctatgaattt |
4560205 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 83 - 192
Target Start/End: Complemental strand, 5025835 - 5025723
Alignment:
| Q |
83 |
tatgaatgcaggaaaagaatcaaaagattgcaaaagagaagcaacaattctccacagaatc---atcagtaacttctgtctcttcatcatcttgttcatc |
179 |
Q |
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||||| |||||| ||||||| ||| || ||| |||||| ||||||| |||||||||||| ||||| |||||| | ||||| || ||||||||||| |
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| T |
5025835 |
tatgattgcaggcaaagaatgtgaaggttccaagagagaatcaacaatcctccacagaatcatcatcaggaacttccatgtcttcgtcgtcttgttcatc |
5025736 |
T |
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| Q |
180 |
tagcatgacatcc |
192 |
Q |
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| T |
5025735 |
tagcatgtcatcc |
5025723 |
T |
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