View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2063_high_4 (Length: 432)

Name: NF2063_high_4
Description: NF2063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2063_high_4
NF2063_high_4
[»] chr1 (6 HSPs)
chr1 (99-432)||(43060225-43060560)
chr1 (9-138)||(43060560-43060689)
chr1 (272-424)||(12882817-12882969)
chr1 (275-338)||(23177380-23177443)
chr1 (283-426)||(27324593-27324736)
chr1 (272-338)||(8530118-8530184)
[»] chr2 (4 HSPs)
chr2 (272-425)||(11482883-11483036)
chr2 (279-338)||(11935433-11935492)
chr2 (279-337)||(1538195-1538253)
chr2 (272-338)||(19283987-19284053)
[»] chr4 (6 HSPs)
chr4 (291-415)||(49130266-49130387)
chr4 (275-351)||(15632168-15632246)
chr4 (272-338)||(54795786-54795852)
chr4 (273-335)||(18714816-18714878)
chr4 (275-337)||(32151096-32151158)
chr4 (279-337)||(41832418-41832476)
[»] chr6 (3 HSPs)
chr6 (274-338)||(13405420-13405484)
chr6 (281-337)||(2044914-2044970)
chr6 (273-337)||(2399363-2399427)
[»] chr3 (3 HSPs)
chr3 (272-432)||(25894605-25894765)
chr3 (272-420)||(44521338-44521485)
chr3 (272-341)||(7441630-7441699)
[»] chr8 (1 HSPs)
chr8 (272-338)||(24797111-24797177)
[»] chr7 (1 HSPs)
chr7 (327-409)||(25090065-25090147)
[»] chr5 (2 HSPs)
chr5 (272-338)||(20487007-20487073)
chr5 (276-338)||(30772918-30772980)


Alignment Details
Target: chr1 (Bit Score: 261; Significance: 1e-145; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 99 - 432
Target Start/End: Complemental strand, 43060560 - 43060225
Alignment:
Q  99 gtcgaatgtgtatactccttaaaacaagaatcaataacaggaaaatatgtgaaaacaataagagactatgatgctcgtgttctctatggaaaccagtacc 198  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||| |||||||||||  |    
T  43060560 gtcgaatgtgtatactccttaaaacaagaatcaataacatgaaaatatgtgaaaacaagaagagactatgatgctcgtgttctctgtggaaaccagtgtc 43060461  T
Q  199 catct--acatgcaatgttttgtaaaccaccttatgtaggttatgatccagggatggagtccttcatgggttgggggcccacccgaaaaaatttaaaagt 296  Q
    |||||  ||||||||||||||||||||||| | ||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||  ||||||    
T  43060460 catctctacatgcaatgttttgtaaaccacttgatgcaggttatgatccaaggatggagtccttcatgggttgggggcccacccgaaaaaatcaaaaagt 43060361  T
Q  297 taacgattgtaagtctattatgcaagattttaaacaattttgctacggttttagtggtcaacgaatctaaatccccatcaattgttgtagtggtccacct 396  Q
    ||||||| ||| ||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  43060360 taacgatcgtaggtctattttgcgagattttaaacaattttgctacggttttagtggtcaacgaatctaaatccccattaattgttgtagtggtccacct 43060261  T
Q  397 agtaaattaaaaaattaaatatcataggtcaatttt 432  Q
    ||||||||||||||||||||||||||||||||||||    
T  43060260 agtaaattaaaaaattaaatatcataggtcaatttt 43060225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 9 - 138
Target Start/End: Complemental strand, 43060689 - 43060560
Alignment:
Q  9 agcaaaggccttgaagaatcaaataagacgcttatagccaatatgagccctccaagcagtcaccctgcattcacgtcatcggtgattacggtcgaatgtg 108  Q
    |||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||    
T  43060689 agcaaaggccttgaagaatcaaataagacgcttagagctaatatgagccctccaagcagtcaccctgcattcacgtattcggtgattacggtcgaatgtg 43060590  T
Q  109 tatactccttaaaacaagaatcaataacag 138  Q
    ||||||||||||||||||||||||||||||    
T  43060589 tatactccttaaaacaagaatcaataacag 43060560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 272 - 424
Target Start/End: Complemental strand, 12882969 - 12882817
Alignment:
Q  272 ggcccacccgaaaaaatttaaaagttaacgattgtaagtctattatgcaagattttaaacaattttgctacggttttagtggtcaacgaatctaaatccc 371  Q
    |||||||||||||||||| |||| || ||||  ||| || || | ||| | |||||||||||||||||||||  ||||||| ||  |  |||||||||||    
T  12882969 ggcccacccgaaaaaattaaaaaattgacgaccgtaggtttaatttgcgaaattttaaacaattttgctacgaatttagtgttctgcagatctaaatccc 12882870  T
Q  372 catcaattgttgtagtggtccacctagtaaattaaaaaattaaatatcatagg 424  Q
    ||  ||||| |||||||  ||| ||   ||||||||||||||||  |||||||    
T  12882869 cactaattggtgtagtgacccatctgaaaaattaaaaaattaaaattcatagg 12882817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 275 - 338
Target Start/End: Original strand, 23177380 - 23177443
Alignment:
Q  275 ccacccgaaaaaatttaaaagttaacgattgtaagtctattatgcaagattttaaacaattttg 338  Q
    ||||||| |||||||||||| | ||||||| |||||||||| ||| ||||||||  ||||||||    
T  23177380 ccacccggaaaaatttaaaaatcaacgattataagtctattttgcgagattttatgcaattttg 23177443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 283 - 426
Target Start/End: Original strand, 27324593 - 27324736
Alignment:
Q  283 aaaaatttaaaagttaacgattgtaagtctattatgcaagattttaaacaattttgctacggttttagtggtcaacgaatctaaatccccatcaattgtt 382  Q
    ||||| |||||| ||||  | |||| ||||||| | | |||||||||||||||||| | ||||||||||| || ||  ||||||||  |||  ||||| |    
T  27324593 aaaaaattaaaaattaataactgtaggtctattttacgagattttaaacaattttgttgcggttttagtgttcgacatatctaaatttccactaattggt 27324692  T
Q  383 gtagtggtccacctagtaaattaaaaaattaaatatcataggtc 426  Q
     |||||| ||| |||| ||||| |||| ||||| | ||||||||    
T  27324693 atagtggcccatctagaaaattgaaaatttaaaaaccataggtc 27324736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 272 - 338
Target Start/End: Original strand, 8530118 - 8530184
Alignment:
Q  272 ggcccacccgaaaaaatttaaaagttaacgattgtaagtctattatgcaagattttaaacaattttg 338  Q
    |||||||||||||||||| |||| | ||||||| || ||||||| ||| ||||||||  ||||||||    
T  8530118 ggcccacccgaaaaaattaaaaaatcaacgattataggtctattttgcgagattttatgcaattttg 8530184  T

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Target: chr2 (Bit Score: 58; Significance: 3e-24; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 272 - 425
Target Start/End: Complemental strand, 11483036 - 11482883
Alignment:
Q  272 ggcccacccgaaaaaatttaaaagttaacgattgtaagtctattatgcaagattttaaacaattttgctacggttttagtggtcaacgaatctaaatccc 371  Q
    |||||||||  ||||||  |||| |||||||  ||| ||||||| ||| |||||||||||||||||| | ||||||||| |  | ||  |||||||||||    
T  11483036 ggcccacccagaaaaataaaaaaattaacgaccgtatgtctattttgcgagattttaaacaattttgatgcggttttagagtccgacagatctaaatccc 11482937  T
Q  372 catcaattgttgtagtggtccacctagtaaattaaaaaattaaatatcataggt 425  Q
    ||| ||||| |||||||| |||||||| |||||||||||||||| || ||||||    
T  11482936 cattaattggtgtagtggcccacctagaaaattaaaaaattaaaaattataggt 11482883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 279 - 338
Target Start/End: Complemental strand, 11935492 - 11935433
Alignment:
Q  279 ccgaaaaaatttaaaagttaacgattgtaagtctattatgcaagattttaaacaattttg 338  Q
    |||||||||||||||| ||||||||| |||||||||| ||| |||||||| |||||||||    
T  11935492 ccgaaaaaatttaaaaattaacgattataagtctattttgcgagattttatacaattttg 11935433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 279 - 337
Target Start/End: Complemental strand, 1538253 - 1538195
Alignment:
Q  279 ccgaaaaaatttaaaagttaacgattgtaagtctattatgcaagattttaaacaatttt 337  Q
    ||||||||||| |||| ||||| ||| || ||||||||||| |||||||||||||||||    
T  1538253 ccgaaaaaattaaaaaattaacaattataggtctattatgcgagattttaaacaatttt 1538195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 272 - 338
Target Start/End: Complemental strand, 19284053 - 19283987
Alignment:
Q  272 ggcccacccgaaaaaatttaaaagttaacgattgtaagtctattatgcaagattttaaacaattttg 338  Q
    |||||||||| |||||||||||| | ||||||| ||| |||||| ||| ||||||||  ||||||||    
T  19284053 ggcccacccggaaaaatttaaaaatcaacgattataaatctattttgcgagattttatgcaattttg 19283987  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 291 - 415
Target Start/End: Original strand, 49130266 - 49130387
Alignment:
Q  291 aaaagttaacgattgtaagtctattatgcaagattttaaacaattttgctacggttttagtggtcaacgaatctaaatccccatcaattgttgtagtggt 390  Q
    |||| ||||| | |||| || |||| ||| |||||||||||||||||| | ||||||||||| || ||  |||||||| ||   || ||| |||||||||    
T  49130266 aaaaattaacaactgtaggtttattttgcgagattttaaacaattttgttgcggttttagtgttcgacatatctaaattcc---cacttgatgtagtggt 49130362  T
Q  391 ccacctagtaaattaaaaaattaaa 415  Q
    |||||||| ||||||| ||||||||    
T  49130363 ccacctagaaaattaacaaattaaa 49130387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 275 - 351
Target Start/End: Original strand, 15632168 - 15632246
Alignment:
Q  275 ccacccgaaaaaatt--taaaagttaacgattgtaagtctattatgcaagattttaaacaattttgctacggttttagt 351  Q
    ||||||||||||||   ||||| ||||| |||||| ||||||| | | ||||||||||||||||||| |||||||||||    
T  15632168 ccacccgaaaaaataaataaaatttaacaattgtaggtctattttacgagattttaaacaattttgcgacggttttagt 15632246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 272 - 338
Target Start/End: Complemental strand, 54795852 - 54795786
Alignment:
Q  272 ggcccacccgaaaaaatttaaaagttaacgattgtaagtctattatgcaagattttaaacaattttg 338  Q
    |||||| ||||||||||| |||| | ||||||| || ||||||| |||||||||||| |||||||||    
T  54795852 ggcccatccgaaaaaattaaaaaatcaacgattataggtctattttgcaagattttatacaattttg 54795786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 273 - 335
Target Start/End: Original strand, 18714816 - 18714878
Alignment:
Q  273 gcccacccgaaaaaatttaaaagttaacgattgtaagtctattatgcaagattttaaacaatt 335  Q
    ||||| |||||||||||||||| ||||||||| || ||||| | ||| |||||||| ||||||    
T  18714816 gcccatccgaaaaaatttaaaaattaacgattataggtctactttgcgagattttatacaatt 18714878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 275 - 337
Target Start/End: Original strand, 32151096 - 32151158
Alignment:
Q  275 ccacccgaaaaaatttaaaagttaacgattgtaagtctattatgcaagattttaaacaatttt 337  Q
    ||||||||||||||| |||| ||||| ||| ||  | |||||||| |||||||||||||||||    
T  32151096 ccacccgaaaaaattaaaaaattaacaattatagatttattatgctagattttaaacaatttt 32151158  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 279 - 337
Target Start/End: Original strand, 41832418 - 41832476
Alignment:
Q  279 ccgaaaaaatttaaaagttaacgattgtaagtctattatgcaagattttaaacaatttt 337  Q
    ||||||||||| |||| ||||||||| || ||||||| ||||||||||||  |||||||    
T  41832418 ccgaaaaaattaaaaaattaacgattatatgtctattttgcaagattttatgcaatttt 41832476  T

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Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 274 - 338
Target Start/End: Complemental strand, 13405484 - 13405420
Alignment:
Q  274 cccacccgaaaaaatttaaaagttaacgattgtaagtctattatgcaagattttaaacaattttg 338  Q
    |||||||||||||||| |||| ||||||||| || ||||||| ||| |||||||| |||||||||    
T  13405484 cccacccgaaaaaattaaaaaattaacgattataggtctattttgcgagattttatacaattttg 13405420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 281 - 337
Target Start/End: Original strand, 2044914 - 2044970
Alignment:
Q  281 gaaaaaatttaaaagttaacgattgtaagtctattatgcaagattttaaacaatttt 337  Q
    ||||||||| |||| ||||| ||| || || |||||||| |||||||||||||||||    
T  2044914 gaaaaaattaaaaaattaacaattatatgtatattatgcgagattttaaacaatttt 2044970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 273 - 337
Target Start/End: Complemental strand, 2399427 - 2399363
Alignment:
Q  273 gcccacccgaaaaaatttaaaagttaacgattgtaagtctattatgcaagattttaaacaatttt 337  Q
    ||||||| ||||||| |||||| | ||| ||| || ||||||| ||| |||||||||||||||||    
T  2399427 gcccacctgaaaaaaattaaaaatgaacaattataggtctattctgcgagattttaaacaatttt 2399363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000006; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 272 - 432
Target Start/End: Complemental strand, 25894765 - 25894605
Alignment:
Q  272 ggcccacccgaaaaaatttaaaag-ttaacgattgtaagtctattatgcaagattttaaacaattttgctacggttttagtggtcaacgaatctaaatcc 370  Q
    |||||||||| ||||||| ||||  || |||| | || ||||||| ||| ||||||||||||||||| | ||| |||||||| || |  ||||||| |||    
T  25894765 ggcccacccggaaaaattaaaaaaatttacgactataggtctattttgcgagattttaaacaattttaccacgattttagtgttcgataaatctaagtcc 25894666  T
Q  371 ccatcaattgttgtagtggtccacctagtaaattaaaaaattaaatatcataggtcaatttt 432  Q
     ||  ||||| |||||||  |||||| | ||| |||||||| ||| |||||||||| |||||    
T  25894665 tcagtaattggtgtagtgacccacct-gaaaaataaaaaataaaaaatcataggtctatttt 25894605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 272 - 420
Target Start/End: Complemental strand, 44521485 - 44521338
Alignment:
Q  272 ggcccacccgaaaaaatttaaaagttaacgattgtaagtctattatgcaagattttaaacaattttgctacggttttagtggtcaacgaatctaaatccc 371  Q
    |||||| ||||||||||| |||| ||||| |  |||| | |||| ||  ||||||||||||||||||||||| |||||| | ||||   ||||||||  |    
T  44521485 ggcccatccgaaaaaattaaaaaattaacaaccgtaatt-tattttgtgagattttaaacaattttgctacgattttagcgttcaatatatctaaatttc 44521387  T
Q  372 catcaattgttgtagtggtccacctagtaaattaaaaaattaaatatca 420  Q
    ||| || || |||||||  ||||| || ||||||| |||||||| ||||    
T  44521386 cattaactggtgtagtgacccaccaagaaaattaacaaattaaaaatca 44521338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 272 - 341
Target Start/End: Complemental strand, 7441699 - 7441630
Alignment:
Q  272 ggcccacccgaaaaaatttaaaagttaacgattgtaagtctattatgcaagattttaaacaattttgcta 341  Q
    |||||||| ||||||||| |||| | |||||   || ||||| | |||||||||||||||||||||||||    
T  7441699 ggcccacctgaaaaaattaaaaaatcaacgaccataggtctactttgcaagattttaaacaattttgcta 7441630  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 272 - 338
Target Start/End: Complemental strand, 24797177 - 24797111
Alignment:
Q  272 ggcccacccgaaaaaatttaaaagttaacgattgtaagtctattatgcaagattttaaacaattttg 338  Q
    |||||| ||| |||||||||||| | ||||||| || ||||||| ||||||||||||  ||||||||    
T  24797177 ggcccatccggaaaaatttaaaaatcaacgattataggtctattttgcaagattttatgcaattttg 24797111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 327 - 409
Target Start/End: Original strand, 25090065 - 25090147
Alignment:
Q  327 taaacaattttgctacggttttagtggtcaacgaatctaaatccccatcaattgttgtagtggtccacctagtaaattaaaaa 409  Q
    |||||||||||||| | ||||||||  || ||  ||||||||| |||  ||||| |||||||| |||||||| ||||||||||    
T  25090065 taaacaattttgctgctgttttagtattcgacatatctaaatctccactaattggtgtagtggcccacctagaaaattaaaaa 25090147  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 272 - 338
Target Start/End: Original strand, 20487007 - 20487073
Alignment:
Q  272 ggcccacccgaaaaaatttaaaagttaacgattgtaagtctattatgcaagattttaaacaattttg 338  Q
    ||||||| |||||||||| |||| ||||||||  || || |||| |||||||||||| |||||||||    
T  20487007 ggcccactcgaaaaaattaaaaaattaacgatcataggtatattttgcaagattttatacaattttg 20487073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 276 - 338
Target Start/End: Original strand, 30772918 - 30772980
Alignment:
Q  276 cacccgaaaaaatttaaaagttaacgattgtaagtctattatgcaagattttaaacaattttg 338  Q
    |||||||||||||| |||| | ||||||| || ||||||| ||||||||||||  ||||||||    
T  30772918 cacccgaaaaaattaaaaaatcaacgattataggtctattttgcaagattttatgcaattttg 30772980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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