View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2063_high_8 (Length: 347)
Name: NF2063_high_8
Description: NF2063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2063_high_8 |
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Alignment Details
Target: chr3 (Bit Score: 315; Significance: 1e-177; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 19 - 337
Target Start/End: Original strand, 49521172 - 49521490
Alignment:
| Q |
19 |
agtttcgccatcttcttctgatagcattgcatcagaagggtggattagaattctatcaagcacttcaattgggaataggaattgcttcccaacttgcttt |
118 |
Q |
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| T |
49521172 |
agtttcgccatcttcttctgatagcattgcatcagaagggtggattagaattctatcaagcacttcaattgggaataggaattgcttcccaacttgcttt |
49521271 |
T |
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| Q |
119 |
tcccacctctgctcaaaattgtacaacacatcccatgcaataggtccttctagcttgcagtgaatatcatgccacggttctctaggaccacctttcttaa |
218 |
Q |
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| T |
49521272 |
tcccacctctgctcaaaattgtacaacacatcccatgcaataggtccttctagcttgcagtgaatatcatgccacggttctctaggaccacctttcttaa |
49521371 |
T |
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| Q |
219 |
tagaagcacctgggaaatttggttgatgaaaatcatcatgatggattgtattcaatgtcgaaaacaaaggatgttccattgtatcatatcttccatcgca |
318 |
Q |
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| T |
49521372 |
tagaagcacctgggaaatttggttgatgaaaatcatcatgatggattgtattcaatgttgaaaacaaaggatgttccattgtatcatatcttccatcgca |
49521471 |
T |
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| Q |
319 |
aagatcaataccgcctatg |
337 |
Q |
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| T |
49521472 |
aagatcaataccgcctatg |
49521490 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 98 - 230
Target Start/End: Original strand, 49510108 - 49510240
Alignment:
| Q |
98 |
aattgcttcccaacttgcttttcccacctctgctcaaaattgtacaacacatcccatgcaataggtccttctagcttgcagtgaatatcatgccacggtt |
197 |
Q |
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| T |
49510108 |
aattgttttccaacttgcttttcccatctttgctcaaaattgcacaacacatcccaagcaacaggtccttctagtttacaatgaatatcatgccatggct |
49510207 |
T |
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| Q |
198 |
ctctaggaccacctttcttaatagaagcacctg |
230 |
Q |
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| T |
49510208 |
ctctaggaccacctttattaatagaagcacctg |
49510240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 225 - 330
Target Start/End: Original strand, 49510428 - 49510533
Alignment:
| Q |
225 |
cacctgggaaatttggttgatgaaaatcatcatgatggattgtattcaatgtcgaaaacaaaggatgttccattgtatcatatcttccatcgcaaagatc |
324 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||| || |||||||||||||||||||| ||||||||||| ||||| |||||||| |
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| T |
49510428 |
cacctgggaaatttggttgatgaaaatcatcatgatgaattgtattcagagttgaaaacaaaggatgttccatggtatcatatctcccatcacaaagatc |
49510527 |
T |
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| Q |
325 |
aatacc |
330 |
Q |
| |
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|||||| |
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| T |
49510528 |
aatacc |
49510533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 125 - 261
Target Start/End: Complemental strand, 44662438 - 44662302
Alignment:
| Q |
125 |
ctctgctcaaaattgtacaacacatcccatgcaataggtccttctagcttgcagtgaatatcatgccacggttctctaggaccacctttcttaatagaag |
224 |
Q |
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||||||||||| || |||| |||||||| ||||| || ||||| ||| | |||| ||||||||||| ||||| |||||||||||||| | || |||| |
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| T |
44662438 |
ctctgctcaaagttaaacaaaacatcccaagcaatgggaccttcaagccttgagtggatatcatgccaaggttccctaggaccacctttttctattgaag |
44662339 |
T |
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| Q |
225 |
cacctgggaaatttggttgatgaaaatcatcatgatg |
261 |
Q |
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| T |
44662338 |
caccaggaaagttaggctgatgaaaatcatcatgatg |
44662302 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 141 - 258
Target Start/End: Original strand, 2416636 - 2416753
Alignment:
| Q |
141 |
acaacacatcccatgcaataggtccttctagcttgcagtgaatatcatgccacggttctctaggaccacctttcttaatagaagcacctgggaaatttgg |
240 |
Q |
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||||||||||||| ||||| |||||||| || | | ||||| |||||||| ||||| || ||||| ||||| | || | ||||||||| || || || |
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| T |
2416636 |
acaacacatcccaagcaatcggtccttcaaggcgggaatgaatgtcatgccaaggttcccttggaccgccttttgtgattgcagcacctggaaagttagg |
2416735 |
T |
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| Q |
241 |
ttgatgaaaatcatcatg |
258 |
Q |
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|||||||||||||||||| |
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| T |
2416736 |
ttgatgaaaatcatcatg |
2416753 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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