View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2063_high_9 (Length: 344)
Name: NF2063_high_9
Description: NF2063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2063_high_9 |
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Alignment Details
Target: chr5 (Bit Score: 308; Significance: 1e-173; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 1 - 332
Target Start/End: Complemental strand, 9932911 - 9932580
Alignment:
| Q |
1 |
acgaaaaatcataaacacaataattataatatcgnnnnnnnncagctggagtagtgactgtagtgtctatttttatacaactttttcttggagtcctttt |
100 |
Q |
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| T |
9932911 |
acgaaaaatcataaacacaataattataatatcgaaaaaaaacagctggagtagtgactgtagtgtctatttttatacaactttttcttggagtcctttt |
9932812 |
T |
|
| Q |
101 |
gtttgcattattgaacatgttgctataactaattcctagaaaaaggcttatcacttttaattgaatagtcacaatttgtgcaaacttgcatgcataatat |
200 |
Q |
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| T |
9932811 |
gtttgcattattgaacatgttgctataactaattcctagaaaaaggcttatcacttttaattgaatagtcacaatttgtgcaaacttgcatgcataatat |
9932712 |
T |
|
| Q |
201 |
taaacaactgtggctaggacagacaaaaggaggtaaaacctctaacatgttgcgatggcttatcctttaaggaggccaattgaacgatatttaaagagaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9932711 |
taaacaactgtggctaggacagacaaaaggaggtaaaacctctaacatgttgcgatggcttatcctttaaggaggccaattgaacgatatttaaagagaa |
9932612 |
T |
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| Q |
301 |
atagtgtctcaatcccaaaccatagggcatat |
332 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
9932611 |
atagtgtctcaatcccaaaccatagggcatat |
9932580 |
T |
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