View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2063_low_1 (Length: 826)
Name: NF2063_low_1
Description: NF2063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2063_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 439; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 439; E-Value: 0
Query Start/End: Original strand, 255 - 733
Target Start/End: Complemental strand, 31406740 - 31406263
Alignment:
| Q |
255 |
tagaagttgaaataccttgttttcatatatcaattggccattattaactgttttggtgttgaaattgcagggtccaacatttggagcaatgatgatttca |
354 |
Q |
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| T |
31406740 |
tagaagttgaaataccttgttttcatatat-aattggccattattaactgttttggtgttgaaattgcagggtccaacatttggagcaatgatgatttca |
31406642 |
T |
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| Q |
355 |
ggacagaaggcagctcatttggccttgagagcactgggacttccaaatgttgtggatcatgcaagaaatattcaccctgagcttgtcctagctgctgctg |
454 |
Q |
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| T |
31406641 |
ggacagaaggcagctcatttggccttgagagcactgggacttccaaatgctgtggatcatgcaggaaatattcaccctgagcttgtcctagctgctgctg |
31406542 |
T |
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| Q |
455 |
attctgctgatattgcagaagcttaattattgttaccatattaactatttagttaatagtatcgaagtgctagtagccagaaataaaactttgtctttgt |
554 |
Q |
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| T |
31406541 |
attctgctgatattgcagaagcttaattattgttaccatattaactatttagttaatagtatcgaagtgctagtaaccagaaataaaactttgtctttgt |
31406442 |
T |
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| Q |
555 |
tgtttgttagtcactattatgggcaggttgatgtgactctctatgagcttttttgtcattaatatgaatgaatgtgtttgccaactccttgcatttcttt |
654 |
Q |
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| T |
31406441 |
tgtttgttagtagtgattatgggcaggttgatgtgactctgtatgagcttttttgtcattaatatgaatgaatgtgtttgccaactccttgcatttcttt |
31406342 |
T |
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| Q |
655 |
ctcctccactaatatttatgattgttttttaatgaaaagggaatactattaaggggacagaattcccccaatcctccca |
733 |
Q |
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| T |
31406341 |
ctcctccactaatatttatgattgttttttaatgaaaagggaatactattaaggggacagaattcccccaatcctccca |
31406263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 175; E-Value: 9e-94
Query Start/End: Original strand, 51 - 257
Target Start/End: Complemental strand, 31406982 - 31406777
Alignment:
| Q |
51 |
tgatgggtccaaccccaaagtgggactgaataggaactcataatcatacctaatgagacaactctctttatcaaaaagtcgtggtcccagtttgctaaat |
150 |
Q |
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| T |
31406982 |
tgatgggtccaaccccaaagtgggacttaataggaattcataatcatacctaatgagacaactctctttatcaaaaagtcgtggtcccagtctgctaaat |
31406883 |
T |
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| Q |
151 |
ttatgttcagttgttcatggaatctttcttgtcctttctgcaattcttcttttgattattactttatttcatttggataaccaactgagattcatgtaat |
250 |
Q |
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| T |
31406882 |
ttatgttcaattgttcatggaatctttcttgtcctttatgcaattcttcttttcattattacttta-ttcatttggataaccaactgagattcatgtaat |
31406784 |
T |
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| Q |
251 |
gcgctag |
257 |
Q |
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| T |
31406783 |
gcgctag |
31406777 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 731 - 819
Target Start/End: Complemental strand, 31405891 - 31405803
Alignment:
| Q |
731 |
ccaactggatatttctgcatcttagatagggtttcctactattttcctctatactagcacttgatcaaggccttcacatttggtctgtg |
819 |
Q |
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| T |
31405891 |
ccaactggatatttctgcatcttagatagggtttcctactattttcctctatactagcacttgatcaaggccttcacatttggtctgtg |
31405803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 323 - 382
Target Start/End: Complemental strand, 47480653 - 47480594
Alignment:
| Q |
323 |
agggtccaacatttggagcaatgatgatttcaggacagaaggcagctcatttggccttga |
382 |
Q |
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| T |
47480653 |
agggtccaacatttggggcaatgatgatatcaggacagaaagctgcacatttggcattga |
47480594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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