View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2063_low_10 (Length: 316)
Name: NF2063_low_10
Description: NF2063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2063_low_10 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 292; Significance: 1e-164; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 1 - 304
Target Start/End: Original strand, 49521488 - 49521791
Alignment:
| Q |
1 |
atgacactgataactgttcgcttctgcgatgcttcaacatgatggccatcaacaactatagtcttttggtgatgagtgaacatagttgaagtttcaaaac |
100 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49521488 |
atgaaactgataactgttcgcttctgcgatgcttcaacatgatggccatcaacaactatagtcttttggtgatgagtgaacatagttgaagtttcaaaac |
49521587 |
T |
|
| Q |
101 |
cttgaactatgctttttccaccatcagggttacgcggacataaaacacaatgtacctttgtgtttttaaaatactctgcagtttcttggtcatgtgttcc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
49521588 |
cttgaactatgctttttccaccatcagggttacgcggacataaaacacaatgtacctttgtgttcttaaaatactctgcagtttcttggtcatgtgttcc |
49521687 |
T |
|
| Q |
201 |
catcaaaccgtctttcttaaaagccggaacagaggttctgtcatcccaaacaagcacaagaacattaacaccttcattggcttttttcttgagcatttct |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
49521688 |
catcaaaccgtctttcttaaaagccggaacagaggttctgtcatcccaaacaagcacaagaacattaacaccttcgttggcttttttcttgagcatttct |
49521787 |
T |
|
| Q |
301 |
ccta |
304 |
Q |
| |
|
|||| |
|
|
| T |
49521788 |
ccta |
49521791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 49 - 290
Target Start/End: Original strand, 49510592 - 49510833
Alignment:
| Q |
49 |
tcaacaactatagtcttttggtgatgagtgaacatagttgaagtttcaaaaccttgaactatgctttttccaccatcagggttacgcggacataaaacac |
148 |
Q |
| |
|
||||||| ||||||||| ||||||||||||||||||||| || ||||||||||||||||||| ||| ||||| || |||| |||||||| || ||||||| |
|
|
| T |
49510592 |
tcaacaattatagtcttctggtgatgagtgaacatagttaaaatttcaaaaccttgaactatacttcttccatcaccaggtttacgcgggcacaaaacac |
49510691 |
T |
|
| Q |
149 |
aatgtacctttgtgtttttaaaatactctgcagtttcttggtcatgtgttcccatcaaaccgtctttcttaaaagccggaacagaggttctgtcatccca |
248 |
Q |
| |
|
|||| || ||||||||| ||||||||||||| |||||||| ||||| ||| ||||||| || ||||||||||| | |||||||| |||||||||||||| |
|
|
| T |
49510692 |
aatggacatttgtgtttctaaaatactctgctgtttcttgatcatgagttgccatcaagccatctttcttaaagtcaggaacagaagttctgtcatccca |
49510791 |
T |
|
| Q |
249 |
aacaagcacaagaacattaacaccttcattggcttttttctt |
290 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||| ||||| |
|
|
| T |
49510792 |
aacaagcataagaacattaacaccttcattggctttcttctt |
49510833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University