View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2063_low_12 (Length: 273)

Name: NF2063_low_12
Description: NF2063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2063_low_12
NF2063_low_12
[»] chr4 (4 HSPs)
chr4 (11-259)||(54779169-54779414)
chr4 (18-219)||(52282415-52282625)
chr4 (11-220)||(54789784-54789978)
chr4 (11-43)||(843150-843182)
[»] chr8 (1 HSPs)
chr8 (11-220)||(19295825-19296019)
[»] chr6 (1 HSPs)
chr6 (11-71)||(22745526-22745586)
[»] chr2 (1 HSPs)
chr2 (17-52)||(21186631-21186666)
[»] chr5 (1 HSPs)
chr5 (11-55)||(9878029-9878073)
[»] chr3 (1 HSPs)
chr3 (16-52)||(28525031-28525067)


Alignment Details
Target: chr4 (Bit Score: 198; Significance: 1e-108; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 11 - 259
Target Start/End: Original strand, 54779169 - 54779414
Alignment:
Q  11 agaatatgaattatttgaacgtaatcacatgtgtcagtgtcatgttagtgtccgacaccgaccgacaagtgtgggacacgcctttgatcagaggtgtgtg 110  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54779169 agaaaatgaattatttgaacgtaatcacatgtgtcagtgtcatgttagtgtccgacaccgaccgacaagtgtgggacacgcctttgatcagaggtgtgtg 54779268  T
Q  111 ccacaaagaaagaaagaccggttgaaactaggcaaaataataatatacaaataaaagaccttataatactctagttcctatcacaaaaatgcagagctaa 210  Q
    |||||||||||||||||| |||||||||||||   ||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54779269 ccacaaagaaagaaagactggttgaaactagg---aaacataatatacaaataaaagaccttataatactctagttcctatcacaaaaatgcagagctaa 54779365  T
Q  211 gaatgggaaggaatnnnnnnncagcatttaaactttcacacataggtat 259  Q
    ||||||||||||||       ||||||||||||||||||||||||||||    
T  54779366 gaatgggaaggaataaaaaaacagcatttaaactttcacacataggtat 54779414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 18 - 219
Target Start/End: Complemental strand, 52282625 - 52282415
Alignment:
Q  18 gaattatttgaacgtaatcacatgtgtcagtgtcatgttagtgtccgacaccgaccgacaagtgtgggacac-------gcctttgatcagaggtgt--g 108  Q
    |||||||||| || ||||||||||||||||| || |||||||||||||||||||||||||||||||||||||       ||||||||||||||||||  |    
T  52282625 gaattatttgtacataatcacatgtgtcagtttcgtgttagtgtccgacaccgaccgacaagtgtgggacactgaacacgcctttgatcagaggtgttgg 52282526  T
Q  109 tgccacaaagaaagaaagaccggttgaaactaggcaaaataataatatacaaataaaagaccttataatactctagttcctatcacaaaaatgcagagct 208  Q
    ||||||| || ||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||    
T  52282525 tgccacagagtaagaaagactggttgaaactaggaaaaataataatatacaaataaaagaccttataataccctagttgctatcacaaaaatgcagagct 52282426  T
Q  209 aagaatgggaa 219  Q
    | |||||||||    
T  52282425 aggaatgggaa 52282415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 11 - 220
Target Start/End: Complemental strand, 54789978 - 54789784
Alignment:
Q  11 agaatatgaattatttgaacgtaatcacatgtgtcagtgtcatgttagtgtccgacaccgaccgacaagtgtgggacacgcctttgatcagaggtgt--g 108  Q
    |||| ||||||||||||||||||| ||||||||||| |||| |||||||||  ||||||||||||||   ||              |||||||||||  |    
T  54789978 agaacatgaattatttgaacgtaaccacatgtgtcaatgtcgtgttagtgttggacaccgaccgaca---gt--------------atcagaggtgttgg 54789896  T
Q  109 tgccacaaagaaagaaagaccggttgaaactaggcaaaataataatatacaaataaaagaccttataatactctagttcctatcacaaaaatgcagagct 208  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  54789895 tgccacaaagaaagaaagactggttgaaactaggcaaaataataatatacaaataaaagaccttataataccctagttcctatcacaaaaatgcagagct 54789796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 11 - 43
Target Start/End: Complemental strand, 843182 - 843150
Alignment:
Q  11 agaatatgaattatttgaacgtaatcacatgtg 43  Q
    |||| ||||||||||||||||||||||||||||    
T  843182 agaaaatgaattatttgaacgtaatcacatgtg 843150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 104; Significance: 6e-52; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 11 - 220
Target Start/End: Complemental strand, 19296019 - 19295825
Alignment:
Q  11 agaatatgaattatttgaacgtaatcacatgtgtcagtgtcatgttagtgtccgacaccgaccgacaagtgtgggacacgcctttgatcagaggtgt--g 108  Q
    |||| ||||||||||||||||||| ||||||||||| |||| |||||||||  ||||||||||||||   ||              |||||||||||  |    
T  19296019 agaacatgaattatttgaacgtaaccacatgtgtcaatgtcgtgttagtgttggacaccgaccgaca---gt--------------atcagaggtgttgg 19295937  T
Q  109 tgccacaaagaaagaaagaccggttgaaactaggcaaaataataatatacaaataaaagaccttataatactctagttcctatcacaaaaatgcagagct 208  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  19295936 tgccacaaagaaagaaagactggttgaaactaggcaaaataataatatacaaataaaagaccttataataccctagttcctatcacaaaaatgcagagct 19295837  T

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Target: chr6 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 11 - 71
Target Start/End: Complemental strand, 22745586 - 22745526
Alignment:
Q  11 agaatatgaattatttgaacgtaatcacatgtgtcagtgtcatgttagtgtccgacaccga 71  Q
    |||| ||||||||||| |||||||| |||||| ||||||||||||| ||||| ||||||||    
T  22745586 agaaaatgaattatttaaacgtaatgacatgtttcagtgtcatgttggtgtcggacaccga 22745526  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 17 - 52
Target Start/End: Complemental strand, 21186666 - 21186631
Alignment:
Q  17 tgaattatttgaacgtaatcacatgtgtcagtgtca 52  Q
    ||||||||||||||||||||||||||||| ||||||    
T  21186666 tgaattatttgaacgtaatcacatgtgtcggtgtca 21186631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 11 - 55
Target Start/End: Complemental strand, 9878073 - 9878029
Alignment:
Q  11 agaatatgaattatttgaacgtaatcacatgtgtcagtgtcatgt 55  Q
    ||||||||||||| ||||| |||||||| |||||||||| |||||    
T  9878073 agaatatgaattaattgaatgtaatcacttgtgtcagtgccatgt 9878029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 16 - 52
Target Start/End: Original strand, 28525031 - 28525067
Alignment:
Q  16 atgaattatttgaacgtaatcacatgtgtcagtgtca 52  Q
    |||||||| ||||| ||||||||||||||||||||||    
T  28525031 atgaattaattgaatgtaatcacatgtgtcagtgtca 28525067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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