View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2063_low_16 (Length: 260)

Name: NF2063_low_16
Description: NF2063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2063_low_16
NF2063_low_16
[»] chr1 (6 HSPs)
chr1 (1-230)||(35692089-35692318)
chr1 (191-243)||(48615360-48615412)
chr1 (184-243)||(51703779-51703838)
chr1 (186-243)||(33700790-33700847)
chr1 (183-243)||(31794281-31794341)
chr1 (68-170)||(35692251-35692352)
[»] chr7 (5 HSPs)
chr7 (31-69)||(15238046-15238084)
chr7 (184-237)||(18056798-18056851)
chr7 (184-237)||(35313049-35313102)
chr7 (31-69)||(14787364-14787402)
chr7 (31-69)||(15228400-15228438)
[»] chr5 (5 HSPs)
chr5 (31-69)||(17546048-17546086)
chr5 (184-243)||(19043458-19043517)
chr5 (184-243)||(25627057-25627116)
chr5 (184-243)||(34984806-34984865)
chr5 (183-237)||(16773806-16773860)
[»] chr4 (3 HSPs)
chr4 (184-243)||(26605729-26605788)
chr4 (31-69)||(24235587-24235625)
chr4 (187-243)||(7292815-7292871)
[»] chr3 (2 HSPs)
chr3 (184-243)||(27093378-27093437)
chr3 (188-235)||(49494171-49494218)
[»] chr2 (5 HSPs)
chr2 (184-243)||(5147696-5147755)
chr2 (90-153)||(12873757-12873820)
chr2 (90-153)||(28248984-28249047)
chr2 (184-237)||(12994399-12994452)
chr2 (183-243)||(42922413-42922473)
[»] chr6 (1 HSPs)
chr6 (186-243)||(32613157-32613214)


Alignment Details
Target: chr1 (Bit Score: 198; Significance: 1e-108; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 35692318 - 35692089
Alignment:
Q  1 tagactatactgtaaaccaaatacattaatttattcaatgaatctgaaaatataatatttgtttataattatcttttcagatttgttagataaatgatgt 100  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||    
T  35692318 tagactatattgtaaaccaaatacattaatttattcaatgaatctgaaaagataatatttgtttataattatcttttcagatttgttagataaacgatgt 35692219  T
Q  101 atttagactatattgtaaaccaattacattgattatttaatgaacttaaaaagattaaatttgcttataacagtgaccgaatgaacccacttgagttagt 200  Q
    |||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  35692218 atttagactatattgtaaactaattacattgattatttaatgaacctaaaaagattaaatttgcttataacagtgaccgaatgaatccacttgagttagt 35692119  T
Q  201 ctagtggtattgacttggattttgggagtg 230  Q
    || ||||||||||||||||| |||||||||    
T  35692118 ctggtggtattgacttggatcttgggagtg 35692089  T

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Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 191 - 243
Target Start/End: Complemental strand, 48615412 - 48615360
Alignment:
Q  191 ttgagttagtctagtggtattgacttggattttgggagtgtgctccttctcaa 243  Q
    ||||||||||||||||||||| ||||||| | |||||||||||||||||||||    
T  48615412 ttgagttagtctagtggtattaacttggaatctgggagtgtgctccttctcaa 48615360  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 184 - 243
Target Start/End: Original strand, 51703779 - 51703838
Alignment:
Q  184 aacccacttgagttagtctagtggtattgacttggattttgggagtgtgctccttctcaa 243  Q
    |||||| ||| ||| |||||||||||||| |||||| | ||||||||||||||| |||||    
T  51703779 aacccatttgggttggtctagtggtattggcttggaatctgggagtgtgctcctcctcaa 51703838  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 186 - 243
Target Start/End: Complemental strand, 33700847 - 33700790
Alignment:
Q  186 cccacttgagttagtctagtggtattgacttggattttgggagtgtgctccttctcaa 243  Q
    |||||||| ||| | |||||||||||| |||||| | ||||||||||||||| |||||    
T  33700847 cccacttgggttggcctagtggtattggcttggaatctgggagtgtgctcctcctcaa 33700790  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 183 - 243
Target Start/End: Complemental strand, 31794341 - 31794281
Alignment:
Q  183 gaacccacttgagttagtctagtggtattgacttggattttgggagtgtgctccttctcaa 243  Q
    ||||||||||| ||| | |||||||||||| |||||   |||||||||||||||| |||||    
T  31794341 gaacccacttgggttggcctagtggtattggcttgggacttgggagtgtgctcctcctcaa 31794281  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 68 - 170
Target Start/End: Complemental strand, 35692352 - 35692251
Alignment:
Q  68 attatcttttcagatttgttagataaatgatgtatttagactatattgtaaaccaattacattga-ttatttaatgaacttaaaaagattaaatttgctt 166  Q
    ||||| ||||||||||| ||| ||| || ||  ||||||||||||||||||||||| |||||| | ||||| ||||||  | ||||||| | ||||| ||    
T  35692352 attatattttcagatttattaaatatattat--atttagactatattgtaaaccaaatacattaatttattcaatgaatctgaaaagataatatttgttt 35692255  T
Q  167 ataa 170  Q
    ||||    
T  35692254 ataa 35692251  T

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Target: chr7 (Bit Score: 35; Significance: 0.00000000009; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 31 - 69
Target Start/End: Original strand, 15238046 - 15238084
Alignment:
Q  31 ttattcaatgaatctgaaaatataatatttgtttataat 69  Q
    ||||| |||||||||||||||||||||||||||||||||    
T  15238046 ttatttaatgaatctgaaaatataatatttgtttataat 15238084  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 184 - 237
Target Start/End: Complemental strand, 18056851 - 18056798
Alignment:
Q  184 aacccacttgagttagtctagtggtattgacttggattttgggagtgtgctcct 237  Q
    |||||||||| |||||||| ||||||||||||||| | || |||||||||||||    
T  18056851 aacccacttgggttagtctggtggtattgacttgggtcttcggagtgtgctcct 18056798  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 184 - 237
Target Start/End: Original strand, 35313049 - 35313102
Alignment:
Q  184 aacccacttgagttagtctagtggtattgacttggattttgggagtgtgctcct 237  Q
    |||||||||||||||| ||||||||||||||||||| ||||  ||| |||||||    
T  35313049 aacccacttgagttagcctagtggtattgacttggaatttgaaagtctgctcct 35313102  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 69
Target Start/End: Original strand, 14787364 - 14787402
Alignment:
Q  31 ttattcaatgaatctgaaaatataatatttgtttataat 69  Q
    ||||| |||||| ||||||||||||||||||||||||||    
T  14787364 ttatttaatgaacctgaaaatataatatttgtttataat 14787402  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 69
Target Start/End: Original strand, 15228400 - 15228438
Alignment:
Q  31 ttattcaatgaatctgaaaatataatatttgtttataat 69  Q
    ||||| |||||| ||||||||||||||||||||||||||    
T  15228400 ttatttaatgaacctgaaaatataatatttgtttataat 15228438  T

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Target: chr5 (Bit Score: 35; Significance: 0.00000000009; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 31 - 69
Target Start/End: Complemental strand, 17546086 - 17546048
Alignment:
Q  31 ttattcaatgaatctgaaaatataatatttgtttataat 69  Q
    ||||| |||||||||||||||||||||||||||||||||    
T  17546086 ttatttaatgaatctgaaaatataatatttgtttataat 17546048  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 184 - 243
Target Start/End: Original strand, 19043458 - 19043517
Alignment:
Q  184 aacccacttgagttagtctagtggtattgacttggattttgggagtgtgctccttctcaa 243  Q
    |||||||||| ||| | |||||| ||||||||||||  ||||||||||| ||||||||||    
T  19043458 aacccacttgggttggcctagtgctattgacttggaacttgggagtgtgttccttctcaa 19043517  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 184 - 243
Target Start/End: Original strand, 25627057 - 25627116
Alignment:
Q  184 aacccacttgagttagtctagtggtattgacttggattttgggagtgtgctccttctcaa 243  Q
    |||||||||| ||| | |||||||||||| ||||||  |||||||||||||||| |||||    
T  25627057 aacccacttgggttggcctagtggtattggcttggaacttgggagtgtgctcctcctcaa 25627116  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 184 - 243
Target Start/End: Original strand, 34984806 - 34984865
Alignment:
Q  184 aacccacttgagttagtctagtggtattgacttggattttgggagtgtgctccttctcaa 243  Q
    |||||||||| ||| |||||||||||||| ||||||   ||||||||||||||| |||||    
T  34984806 aacccacttgggttggtctagtggtattggcttggaacctgggagtgtgctcctcctcaa 34984865  T

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Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 237
Target Start/End: Original strand, 16773806 - 16773860
Alignment:
Q  183 gaacccacttgagttagtctagtggtattgacttggattttgggagtgtgctcct 237  Q
    ||||||||||||||| |||| |||||||||||||||    |||||||||||||||    
T  16773806 gaacccacttgagttggtctggtggtattgacttgggacctgggagtgtgctcct 16773860  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 184 - 243
Target Start/End: Complemental strand, 26605788 - 26605729
Alignment:
Q  184 aacccacttgagttagtctagtggtattgacttggattttgggagtgtgctccttctcaa 243  Q
    |||||| ||||||||| || |||||||||| |||| | || |||||||||||||||||||    
T  26605788 aacccatttgagttagcctggtggtattgagttgggtcttaggagtgtgctccttctcaa 26605729  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 69
Target Start/End: Complemental strand, 24235625 - 24235587
Alignment:
Q  31 ttattcaatgaatctgaaaatataatatttgtttataat 69  Q
    |||||||||||||||||||| |||||||||| |||||||    
T  24235625 ttattcaatgaatctgaaaaaataatatttgcttataat 24235587  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 187 - 243
Target Start/End: Complemental strand, 7292871 - 7292815
Alignment:
Q  187 ccacttgagttagtctagtggtattgacttggattttgggagtgtgctccttctcaa 243  Q
    ||||||| ||| |||||||||||||| ||||||   ||||||||||||||| |||||    
T  7292871 ccacttgggttggtctagtggtattggcttggaacctgggagtgtgctcctcctcaa 7292815  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 184 - 243
Target Start/End: Complemental strand, 27093437 - 27093378
Alignment:
Q  184 aacccacttgagttagtctagtggtattgacttggattttgggagtgtgctccttctcaa 243  Q
    |||||||||| ||| | |||||||||||| ||||||  |||||||||||||||| |||||    
T  27093437 aacccacttgggttggcctagtggtattggcttggaacttgggagtgtgctcctcctcaa 27093378  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 188 - 235
Target Start/End: Complemental strand, 49494218 - 49494171
Alignment:
Q  188 cacttgagttagtctagtggtattgacttggattttgggagtgtgctc 235  Q
    |||||| ||||| ||||||||||||||||| | |||||||||||||||    
T  49494218 cacttgggttagcctagtggtattgacttgaaatttgggagtgtgctc 49494171  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000006; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 184 - 243
Target Start/End: Complemental strand, 5147755 - 5147696
Alignment:
Q  184 aacccacttgagttagtctagtggtattgacttggattttgggagtgtgctccttctcaa 243  Q
    |||||||||| ||| |||||||||||||||||||   | ||||||| |||||||||||||    
T  5147755 aacccacttgggttggtctagtggtattgacttgagatctgggagtatgctccttctcaa 5147696  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 90 - 153
Target Start/End: Complemental strand, 12873820 - 12873757
Alignment:
Q  90 ataaatgatgtatttagactatattgtaaaccaattacattgattatttaatgaacttaaaaag 153  Q
    ||||||||||||||||| ||||||| || ||||| |||||| |||| ||||||||  |||||||    
T  12873820 ataaatgatgtatttagtctatattctataccaaatacattaattacttaatgaatctaaaaag 12873757  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 90 - 153
Target Start/End: Original strand, 28248984 - 28249047
Alignment:
Q  90 ataaatgatgtatttagactatattgtaaaccaattacattgattatttaatgaacttaaaaag 153  Q
    |||||| |||||||||| ||||||| || ||||| |||||| |||||||||||||  |||||||    
T  28248984 ataaataatgtatttagtctatattctataccaaatacattaattatttaatgaatctaaaaag 28249047  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 184 - 237
Target Start/End: Complemental strand, 12994452 - 12994399
Alignment:
Q  184 aacccacttgagttagtctagtggtattgacttggattttgggagtgtgctcct 237  Q
    ||||| |||||||| ||||||||||||||||||||    |||||||||||||||    
T  12994452 aacccgcttgagttggtctagtggtattgacttgggacctgggagtgtgctcct 12994399  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 183 - 243
Target Start/End: Original strand, 42922413 - 42922473
Alignment:
Q  183 gaacccacttgagttagtctagtggtattgacttggattttgggagtgtgctccttctcaa 243  Q
    ||||||||||| ||| | |||||||||||| ||||||   ||||||||||||||| |||||    
T  42922413 gaacccacttgggttggcctagtggtattggcttggaacctgggagtgtgctcctcctcaa 42922473  T

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Target: chr6 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 186 - 243
Target Start/End: Complemental strand, 32613214 - 32613157
Alignment:
Q  186 cccacttgagttagtctagtggtattgacttggattttgggagtgtgctccttctcaa 243  Q
    |||||||| ||| | || |||||||||||||||  | |||||||||||||||||||||    
T  32613214 cccacttgggttggcctggtggtattgacttggggtctgggagtgtgctccttctcaa 32613157  T

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