View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2063_low_17 (Length: 250)
Name: NF2063_low_17
Description: NF2063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2063_low_17 |
 | |
|
| [»] chr3 (2 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 223; Significance: 1e-123; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 16 - 250
Target Start/End: Complemental strand, 47811895 - 47811661
Alignment:
| Q |
16 |
atctaaatcgaccgactacactcagcaacaaaaatatgcataccatctatggagattaatttcaattaattaaataccttagtggtttaaacgaaaatca |
115 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47811895 |
atctaaattgaccgactacactcagcaacaaaaatatgcataccatctatggagattaatttcaattaattaaataccttagtggtttaaacgaaaatca |
47811796 |
T |
|
| Q |
116 |
atggaaaatcggctattaggagctccgatgctacaaatgcaatcatcggaaaatggaaatcaatggagagacttcaagtgaaatatctggcatcgtggaa |
215 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47811795 |
atggaaaatcggccattaggagctccgatgctacaaatgcaatcatcggaaaatggaaatcaatggagagacttcaagtgaaatatctggcatcgtggaa |
47811696 |
T |
|
| Q |
216 |
cttatgaattctttgtagaagcctgtccaaacttt |
250 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||| |
|
|
| T |
47811695 |
cttataaattctttgtagaagcctgtccaaacttt |
47811661 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 172 - 249
Target Start/End: Complemental strand, 51324035 - 51323958
Alignment:
| Q |
172 |
aaatcaatggagagacttcaagtgaaatatctggcatcgtggaacttatgaattctttgtagaagcctgtccaaactt |
249 |
Q |
| |
|
|||||||||||| ||||||||||| |||||||||||| |||||| || ||||||| ||| ||||| ||| ||||||| |
|
|
| T |
51324035 |
aaatcaatggagtgacttcaagtggaatatctggcattttggaacataagaattctgtgttgaagcttgttcaaactt |
51323958 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 172 - 249
Target Start/End: Original strand, 4748401 - 4748478
Alignment:
| Q |
172 |
aaatcaatggagagacttcaagtgaaatatctggcatcgtggaacttatgaattctttgtagaagcctgtccaaactt |
249 |
Q |
| |
|
|||||||||||| ||||||||||| |||||||||||| |||||| || ||||||| ||| ||||| ||| ||||||| |
|
|
| T |
4748401 |
aaatcaatggagtgacttcaagtggaatatctggcattttggaacataagaattctgtgttgaagcttgttcaaactt |
4748478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University