View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2063_low_18 (Length: 240)
Name: NF2063_low_18
Description: NF2063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2063_low_18 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 47811514 - 47811291
Alignment:
| Q |
1 |
acacagtcattagggttgacaatgactcaatgaaaactgcataaacatgattattccatgtgaaatacgctcaccgctcttctaaatttagaaacatatg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47811514 |
acacagtcattagggttgacaatgactcaatgaaaactgcataaacatgattattccatgtgaaatacgctcaccgctcttctaaatttagaaacatatg |
47811415 |
T |
|
| Q |
101 |
caaccttagtctttcggttatctggaaaacctgcaaatattattgtcaaagaccaacatataaagaaaggtccaacagattatcgatttataataagata |
200 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47811414 |
caaccttagtctttcagttatctggaaaacctgcatatattattgtcaaagaccaacatataaagaaaggtccaacagattatcgatttataataagata |
47811315 |
T |
|
| Q |
201 |
atctttcaagctagcagcataaac |
224 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
47811314 |
atctttcaagctagcagcataaac |
47811291 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University