View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2063_low_19 (Length: 233)

Name: NF2063_low_19
Description: NF2063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2063_low_19
NF2063_low_19
[»] chr4 (4 HSPs)
chr4 (84-233)||(28783672-28783821)
chr4 (14-83)||(11703051-11703120)
chr4 (15-78)||(33410402-33410465)
chr4 (29-83)||(37103668-37103722)
[»] chr2 (6 HSPs)
chr2 (14-75)||(1507108-1507169)
chr2 (14-75)||(1503904-1503965)
chr2 (15-83)||(15719691-15719759)
chr2 (27-83)||(15704437-15704493)
chr2 (27-83)||(38005636-38005692)
chr2 (27-83)||(4577448-4577504)
[»] chr3 (5 HSPs)
chr3 (14-72)||(42354886-42354944)
chr3 (16-83)||(9154402-9154469)
chr3 (27-83)||(2280082-2280138)
chr3 (27-83)||(36037429-36037485)
chr3 (28-83)||(17532073-17532128)
[»] chr7 (6 HSPs)
chr7 (14-83)||(22233099-22233168)
chr7 (14-83)||(22253571-22253640)
chr7 (14-83)||(22256844-22256910)
chr7 (15-83)||(8276592-8276659)
chr7 (33-83)||(44109035-44109085)
chr7 (15-72)||(26557089-26557145)
[»] chr8 (7 HSPs)
chr8 (27-83)||(18721734-18721790)
chr8 (15-83)||(23613140-23613207)
chr8 (27-83)||(25595110-25595166)
chr8 (33-83)||(25591926-25591976)
chr8 (27-83)||(31984592-31984648)
chr8 (27-83)||(18696393-18696449)
chr8 (27-83)||(45155723-45155778)
[»] chr6 (4 HSPs)
chr6 (27-83)||(23388552-23388608)
chr6 (15-83)||(9953572-9953638)
chr6 (25-70)||(13096113-13096158)
chr6 (32-77)||(14969268-14969313)
[»] chr5 (5 HSPs)
chr5 (15-83)||(21333134-21333201)
chr5 (15-83)||(21336150-21336217)
chr5 (25-80)||(28441590-28441645)
chr5 (31-83)||(39192043-39192095)
chr5 (27-79)||(40916188-40916240)
[»] scaffold0062 (2 HSPs)
scaffold0062 (15-83)||(68248-68316)
scaffold0062 (27-83)||(53349-53405)
[»] scaffold0014 (1 HSPs)
scaffold0014 (27-83)||(226950-227006)
[»] scaffold0080 (1 HSPs)
scaffold0080 (28-71)||(26803-26846)
[»] scaffold0214 (1 HSPs)
scaffold0214 (27-83)||(19654-19710)
[»] chr1 (1 HSPs)
chr1 (15-83)||(1950907-1950974)


Alignment Details
Target: chr4 (Bit Score: 142; Significance: 1e-74; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 84 - 233
Target Start/End: Complemental strand, 28783821 - 28783672
Alignment:
Q  84 aaacatcctctttttcctaagcttcctcatcctgatttacctcaatttccccctaaagtttttccaacatttccaccaaagattttccataaacaccctc 183  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28783821 aaacatcctctttttcctaagcttcctcatcctgatttacctcaatttccccctaaagtttttccaacatttccaccaaagattttccataaacaccctc 28783722  T
Q  184 tttttcctcctgttcctatctacaagaaacctccctttcctcatattcct 233  Q
    |||||||||||||||||||||||||||||||||| ||| |||||||||||    
T  28783721 tttttcctcctgttcctatctacaagaaacctccattttctcatattcct 28783672  T

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Target: chr4; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 14 - 83
Target Start/End: Complemental strand, 11703120 - 11703051
Alignment:
Q  14 agattgaaagaagattgaggagcaacgccgacatcgacgaaactctatcagtttattttctttactatgt 83  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||    
T  11703120 agattgaaagaagattgaggagcaacgccgacatcgacgaaattctatcggtttattttctttactatgt 11703051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 15 - 78
Target Start/End: Complemental strand, 33410465 - 33410402
Alignment:
Q  15 gattgaaagaagattgaggagcaacgccgacatcgacgaaactctatcagtttattttctttac 78  Q
    |||||||||||||||||| |||| || ||| | ||||| ||||||||| ||||||||| |||||    
T  33410465 gattgaaagaagattgagaagcaccgtcgaaaacgacggaactctatcggtttattttttttac 33410402  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 83
Target Start/End: Complemental strand, 37103722 - 37103668
Alignment:
Q  29 tgaggagcaacgccgacatcgacgaaactctatcagtttattttctttactatgt 83  Q
    |||||||||| |||| || || |||||||||||| |||||||||||||| |||||    
T  37103722 tgaggagcaaagccggcaacggcgaaactctatcggtttattttctttattatgt 37103668  T

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Target: chr2 (Bit Score: 58; Significance: 2e-24; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 14 - 75
Target Start/End: Complemental strand, 1507169 - 1507108
Alignment:
Q  14 agattgaaagaagattgaggagcaacgccgacatcgacgaaactctatcagtttattttctt 75  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  1507169 agattgaaagaagattgaggagcaacgccgacatcgacgaaactctatcggtttattttctt 1507108  T

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Target: chr2; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 14 - 75
Target Start/End: Complemental strand, 1503965 - 1503904
Alignment:
Q  14 agattgaaagaagattgaggagcaacgccgacatcgacgaaactctatcagtttattttctt 75  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||    
T  1503965 agattgaaagaagattgaggagcaacgccgacatcgacgaaactctatcgatttattttctt 1503904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 15 - 83
Target Start/End: Complemental strand, 15719759 - 15719691
Alignment:
Q  15 gattgaaagaagattgaggagcaacgccgacatcgacgaaactctatcagtttattttctttactatgt 83  Q
    |||||| | ||||||||||||||| | |  || ||||||||||||||| ||||||||||||||||||||    
T  15719759 gattgagaaaagattgaggagcaaagtcatcaacgacgaaactctatcggtttattttctttactatgt 15719691  T

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Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 27 - 83
Target Start/End: Complemental strand, 15704493 - 15704437
Alignment:
Q  27 attgaggagcaacgccgacatcgacgaaactctatcagtttattttctttactatgt 83  Q
    |||||||||||| | |  || ||||||||||||||| ||||||||||||||||||||    
T  15704493 attgaggagcaaagtcatcaacgacgaaactctatcggtttattttctttactatgt 15704437  T

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Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 27 - 83
Target Start/End: Complemental strand, 38005692 - 38005636
Alignment:
Q  27 attgaggagcaacgccgacatcgacgaaactctatcagtttattttctttactatgt 83  Q
    ||||||||| || |||| || ||||| ||||||||| ||||||||||||||||||||    
T  38005692 attgaggagtaaagccggcaacgacggaactctatcggtttattttctttactatgt 38005636  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 83
Target Start/End: Original strand, 4577448 - 4577504
Alignment:
Q  27 attgaggagcaacgccgacatcgacgaaactctatcagtttattttctttactatgt 83  Q
    ||||||||| || |||| || ||||||| |||||||  |||||||||||||||||||    
T  4577448 attgaggagtaaagccggcaacgacgaagctctatcgatttattttctttactatgt 4577504  T

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Target: chr3 (Bit Score: 55; Significance: 9e-23; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 14 - 72
Target Start/End: Complemental strand, 42354944 - 42354886
Alignment:
Q  14 agattgaaagaagattgaggagcaacgccgacatcgacgaaactctatcagtttatttt 72  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  42354944 agattgaaagaagattgaggagcaacgccgacatcgacgaaactctatcggtttatttt 42354886  T

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Target: chr3; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 16 - 83
Target Start/End: Original strand, 9154402 - 9154469
Alignment:
Q  16 attgaaagaagattgaggagcaacgccgacatcgacgaaactctatcagtttattttctttactatgt 83  Q
    |||| |||||||||||||||||||| ||||||||||| |||| |||| ||||||||| ||||||||||    
T  9154402 attggaagaagattgaggagcaacgtcgacatcgacggaactttatctgtttattttttttactatgt 9154469  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 27 - 83
Target Start/End: Complemental strand, 2280138 - 2280082
Alignment:
Q  27 attgaggagcaacgccgacatcgacgaaactctatcagtttattttctttactatgt 83  Q
    ||||||||||||||||| || ||||| || |||||| ||||||||||||||| ||||    
T  2280138 attgaggagcaacgccggcaacgacggaattctatcggtttattttctttacaatgt 2280082  T

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Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 27 - 83
Target Start/End: Complemental strand, 36037485 - 36037429
Alignment:
Q  27 attgaggagcaacgccgacatcgacgaaactctatcagtttattttctttactatgt 83  Q
    ||||| |||||||||||||| || ||||||||||||  ||||||||||||| |||||    
T  36037485 attgatgagcaacgccgacaacgtcgaaactctatcgatttattttctttattatgt 36037429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 28 - 83
Target Start/End: Complemental strand, 17532128 - 17532073
Alignment:
Q  28 ttgaggagcaacgccgacatcgacgaaactctatcagtttattttctttactatgt 83  Q
    ||||||||||| ||||||| ||||| |||||| ||  |||||||||||||||||||    
T  17532128 ttgaggagcaatgccgacaacgacggaactctttcgctttattttctttactatgt 17532073  T

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Target: chr7 (Bit Score: 50; Significance: 9e-20; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 14 - 83
Target Start/End: Complemental strand, 22233168 - 22233099
Alignment:
Q  14 agattgaaagaagattgaggagcaacgccgacatcgacgaaactctatcagtttattttctttactatgt 83  Q
    ||||||||||||||||||||||||||||||| ||||| ||||||||||| ||||||||| |||| |||||    
T  22233168 agattgaaagaagattgaggagcaacgccgatatcgatgaaactctatcggtttattttttttattatgt 22233099  T

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Target: chr7; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 14 - 83
Target Start/End: Original strand, 22253571 - 22253640
Alignment:
Q  14 agattgaaagaagattgaggagcaacgccgacatcgacgaaactctatcagtttattttctttactatgt 83  Q
    ||||||||||||||||||||||||||||||| ||||| ||||||||||| ||||||||| |||| |||||    
T  22253571 agattgaaagaagattgaggagcaacgccgatatcgatgaaactctatcggtttattttttttattatgt 22253640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 14 - 83
Target Start/End: Original strand, 22256844 - 22256910
Alignment:
Q  14 agattgaaagaagattgaggagcaacgccgacatcgacgaaactctatcagtttattttctttactatgt 83  Q
    ||||||||||||||||||||||||||||||   |||||||||||||||| |||||||||||||| |||||    
T  22256844 agattgaaagaagattgaggagcaacgccg---tcgacgaaactctatcggtttattttctttattatgt 22256910  T

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Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 15 - 83
Target Start/End: Original strand, 8276592 - 8276659
Alignment:
Q  15 gattgaaagaagattgaggagcaacgccgacatcgacgaaactctatcagtttattttctttactatgt 83  Q
    ||||||||||| |||||||||||| |||| || ||||| |||||||||||||||||||||||| |||||    
T  8276592 gattgaaagaaaattgaggagcaa-gccggcaacgacggaactctatcagtttattttctttattatgt 8276659  T

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Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 33 - 83
Target Start/End: Complemental strand, 44109085 - 44109035
Alignment:
Q  33 gagcaacgccgacatcgacgaaactctatcagtttattttctttactatgt 83  Q
    |||||||| ||||| |||| |||||||||||||||| ||||||||||||||    
T  44109085 gagcaacgtcgacaacgacaaaactctatcagtttaatttctttactatgt 44109035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 15 - 72
Target Start/End: Original strand, 26557089 - 26557145
Alignment:
Q  15 gattgaaagaagattgaggagcaacgccgacatcgacgaaactctatcagtttatttt 72  Q
    ||||||||||| ||| |||||||| |||| || ||||| |||||||||||||||||||    
T  26557089 gattgaaagaaaattcaggagcaa-gccggcaacgacggaactctatcagtttatttt 26557145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 49; Significance: 4e-19; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 27 - 83
Target Start/End: Complemental strand, 18721790 - 18721734
Alignment:
Q  27 attgaggagcaacgccgacatcgacgaaactctatcagtttattttctttactatgt 83  Q
    |||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||    
T  18721790 attgaggagcaacgccgacaacgacgaaactctatcggtttattttctttactatgt 18721734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 15 - 83
Target Start/End: Original strand, 23613140 - 23613207
Alignment:
Q  15 gattgaaagaagattgaggagcaacgccgacatcgacgaaactctatcagtttattttctttactatgt 83  Q
    |||||||||||||||||| ||||||| ||||| ||||||||||||||| ||||||||||||||||||||    
T  23613140 gattgaaagaagattgag-agcaacgtcgacaacgacgaaactctatcggtttattttctttactatgt 23613207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 27 - 83
Target Start/End: Complemental strand, 25595166 - 25595110
Alignment:
Q  27 attgaggagcaacgccgacatcgacgaaactctatcagtttattttctttactatgt 83  Q
    |||||||||||||||||||| ||||||||||||||| ||||||||| ||||||||||    
T  25595166 attgaggagcaacgccgacaacgacgaaactctatcggtttattttttttactatgt 25595110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 33 - 83
Target Start/End: Complemental strand, 25591976 - 25591926
Alignment:
Q  33 gagcaacgccgacatcgacgaaactctatcagtttattttctttactatgt 83  Q
    |||||||| ||||| ||||||||||||||| ||||||||||||||||||||    
T  25591976 gagcaacgtcgacaacgacgaaactctatcggtttattttctttactatgt 25591926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 27 - 83
Target Start/End: Original strand, 31984592 - 31984648
Alignment:
Q  27 attgaggagcaacgccgacatcgacgaaactctatcagtttattttctttactatgt 83  Q
    ||||||||| || ||||||| ||||||| ||||||| ||||||||||||||||||||    
T  31984592 attgaggagtaaagccgacaacgacgaagctctatcggtttattttctttactatgt 31984648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 27 - 83
Target Start/End: Complemental strand, 18696449 - 18696393
Alignment:
Q  27 attgaggagcaacgccgacatcgacgaaactctatcagtttattttctttactatgt 83  Q
    |||||||||||| | |  || ||||||||||||||| ||||||||||||||||||||    
T  18696449 attgaggagcaaagtcatcaacgacgaaactctatcggtttattttctttactatgt 18696393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 83
Target Start/End: Complemental strand, 45155778 - 45155723
Alignment:
Q  27 attgaggagcaacgccgacatcgacgaaactctatcagtttattttctttactatgt 83  Q
    |||||||||||| |||| || ||||| ||||||||  ||||||||||||||||||||    
T  45155778 attgaggagcaa-gccggcaacgacggaactctatatgtttattttctttactatgt 45155723  T

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Target: chr6 (Bit Score: 49; Significance: 4e-19; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 27 - 83
Target Start/End: Complemental strand, 23388608 - 23388552
Alignment:
Q  27 attgaggagcaacgccgacatcgacgaaactctatcagtttattttctttactatgt 83  Q
    |||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||    
T  23388608 attgaggagcaacgccgacaacgacgaaactctatcggtttattttctttactatgt 23388552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 15 - 83
Target Start/End: Original strand, 9953572 - 9953638
Alignment:
Q  15 gattgaaagaagattgaggagcaacgccgacatcgacgaaactctatcagtttattttctttactatgt 83  Q
    |||||||||||  ||||||||||||||||||| ||||||||||||||| | ||||||| |||| |||||    
T  9953572 gattgaaagaa--ttgaggagcaacgccgacaacgacgaaactctatcggcttattttttttattatgt 9953638  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 25 - 70
Target Start/End: Complemental strand, 13096158 - 13096113
Alignment:
Q  25 agattgaggagcaacgccgacatcgacgaaactctatcagtttatt 70  Q
    ||||||| ||||||| |||||| ||||||||||||||| |||||||    
T  13096158 agattgaagagcaacaccgacaacgacgaaactctatcggtttatt 13096113  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 32 - 77
Target Start/End: Original strand, 14969268 - 14969313
Alignment:
Q  32 ggagcaacgccgacatcgacgaaactctatcagtttattttcttta 77  Q
    ||||||| |||| || ||||||||||||||||||||||||| ||||    
T  14969268 ggagcaaagccggcaacgacgaaactctatcagtttatttttttta 14969313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 15 - 83
Target Start/End: Complemental strand, 21333201 - 21333134
Alignment:
Q  15 gattgaaagaagattgaggagcaacgccgacatcgacgaaactctatcagtttattttctttactatgt 83  Q
    ||||||||||| |||||||||||| |||| || ||||| ||||||||| ||||||||||||||||||||    
T  21333201 gattgaaagaaaattgaggagcaa-gccggcagcgacggaactctatcggtttattttctttactatgt 21333134  T

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Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 15 - 83
Target Start/End: Complemental strand, 21336217 - 21336150
Alignment:
Q  15 gattgaaagaagattgaggagcaacgccgacatcgacgaaactctatcagtttattttctttactatgt 83  Q
    ||||||||||| |||||||||||| |||| || ||||| ||||||||| ||||||||||||||||||||    
T  21336217 gattgaaagaaaattgaggagcaa-gccggcagcgacggaactctatcggtttattttctttactatgt 21336150  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 25 - 80
Target Start/End: Complemental strand, 28441645 - 28441590
Alignment:
Q  25 agattgaggagcaacgccgacatcgacgaaactctatcagtttattttctttacta 80  Q
    ||||||| ||||||| ||| || ||||| ||||||||| |||||||||||||||||    
T  28441645 agattgaagagcaacaccggcaacgacggaactctatcggtttattttctttacta 28441590  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 83
Target Start/End: Original strand, 39192043 - 39192095
Alignment:
Q  31 aggagcaacgccgacatcgacgaaactctatcagtttattttctttactatgt 83  Q
    |||||||||| ||||| |||||||||||||||  |||||||  ||||||||||    
T  39192043 aggagcaacgtcgacaacgacgaaactctatcgatttatttcttttactatgt 39192095  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 79
Target Start/End: Complemental strand, 40916240 - 40916188
Alignment:
Q  27 attgaggagcaacgccgacatcgacgaaactctatcagtttattttctttact 79  Q
    ||||||||| || ||||||| ||||| ||||||||  ||||||||||||||||    
T  40916240 attgaggaggaaagccgacaacgacggaactctattggtttattttctttact 40916188  T

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Target: scaffold0062 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 15 - 83
Target Start/End: Complemental strand, 68316 - 68248
Alignment:
Q  15 gattgaaagaagattgaggagcaacgccgacatcgacgaaactctatcagtttattttctttactatgt 83  Q
    |||||| | ||||||||||||||| | |  || ||||||||||||||| ||||||||||||||||||||    
T  68316 gattgagaaaagattgaggagcaaagtcatcaacgacgaaactctatcggtttattttctttactatgt 68248  T

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Target: scaffold0062; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 27 - 83
Target Start/End: Complemental strand, 53405 - 53349
Alignment:
Q  27 attgaggagcaacgccgacatcgacgaaactctatcagtttattttctttactatgt 83  Q
    |||||||||||| | |  || ||||||||||||||| ||||||||||||||||||||    
T  53405 attgaggagcaaagtcatcaacgacgaaactctatcggtttattttctttactatgt 53349  T

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Target: scaffold0014 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 27 - 83
Target Start/End: Original strand, 226950 - 227006
Alignment:
Q  27 attgaggagcaacgccgacatcgacgaaactctatcagtttattttctttactatgt 83  Q
    ||||||||| || ||||||| ||||||| ||||||| ||||||||||||||||||||    
T  226950 attgaggagtaaagccgacaacgacgaagctctatcggtttattttctttactatgt 227006  T

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Target: scaffold0080 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0080
Description:

Target: scaffold0080; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 28 - 71
Target Start/End: Original strand, 26803 - 26846
Alignment:
Q  28 ttgaggagcaacgccgacatcgacgaaactctatcagtttattt 71  Q
    ||||||||||||| ||||| ||||||||||||||| ||||||||    
T  26803 ttgaggagcaacgtcgacaacgacgaaactctatcggtttattt 26846  T

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Target: scaffold0214 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0214
Description:

Target: scaffold0214; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 83
Target Start/End: Original strand, 19654 - 19710
Alignment:
Q  27 attgaggagcaacgccgacatcgacgaaactctatcagtttattttctttactatgt 83  Q
    ||||| ||| || |||| || ||||||| ||||||| ||||||||||||||||||||    
T  19654 attgatgagtaaagccggcaacgacgaagctctatcggtttattttctttactatgt 19710  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 83
Target Start/End: Complemental strand, 1950974 - 1950907
Alignment:
Q  15 gattgaaagaagattgaggagcaacgccgacatcgacgaaactctatcagtttattttctttactatgt 83  Q
    ||||||||||| ||| |||||| | |||| || ||||| ||||||||  ||||||||||||||||||||    
T  1950974 gattgaaagaaaatt-aggagctaagccggcaacgacggaactctattggtttattttctttactatgt 1950907  T

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