View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20640_high_1 (Length: 545)
Name: NF20640_high_1
Description: NF20640
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20640_high_1 |
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Alignment Details
Target: chr6 (Bit Score: 321; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 1 - 527
Target Start/End: Original strand, 33086370 - 33086907
Alignment:
| Q |
1 |
cttcaagaaattgaaatcgcacttcttccccaggaatagaccttcttacagagttcaattcactgcaataattttgcataattttggctatcatagtttc |
100 |
Q |
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| T |
33086370 |
cttcaagaaattgaaatcgcacttcttccccaggaatagagcttcttacagagttcaattcactgcaataattttgcataatttgggctatcatagtttc |
33086469 |
T |
|
| Q |
101 |
agttatggtcatctacgcgatttgtccatcttggtctaccttaatagtacaaggagaaactcaaggta------------tgtttaagtgtaacatagta |
188 |
Q |
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|| ||||||||| |||| ||||||||||||||||||| ||||||||||||||| ||||||||| |||||||||||||||||||| |
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| T |
33086470 |
agctatggtcatatacgttttttgtccatcttggtctac----atagtacaaggagaagctcaaggtaggaactatgtattgtttaagtgtaacatagta |
33086565 |
T |
|
| Q |
189 |
cgaataggtttagtatattgatactactactagcatctcatgttggggttcagtgattccatgttcatggatagagaaatctgtacaacgagaaaaataa |
288 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
33086566 |
tgaataggtttagtatattgatactactactagcatctcatgttggggtccagtgattccatgtccatggatagagaaatctgtacaacgagaaaaataa |
33086665 |
T |
|
| Q |
289 |
agggggaaatctatgtttcccataatatttgtcaacacgta--ctctgtattatgcaatatagtatttgactaggattataatggcttgaattttgtttt |
386 |
Q |
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|||||||||| |||||| |||||||||||||||||||||| | | ||||||| |||||||||||| |||||||| |||||||||| ||||||| || |
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| T |
33086666 |
tgggggaaatccatgttttccataatatttgtcaacacgtaacgtatttattatgtaatatagtatttttctaggattgtaatggcttgtattttgtctt |
33086765 |
T |
|
| Q |
387 |
caaaatattacttgaaaatcttg-aaataatgtaatgctcgaagtactattgaacttattcgctagagtaagcaacaaaatctattggtaatcaaaatca |
485 |
Q |
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|||||| |||||| ||| ||||| |||||||||||| ||| |||||||||||| ||||||| | |||||||||||||||||| | ||||||||||| || |
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| T |
33086766 |
caaaatgttactttaaattcttgaaaataatgtaattctcaaagtactattgaccttattcaccagagtaagcaacaaaatcggtaggtaatcaaaacca |
33086865 |
T |
|
| Q |
486 |
cattatttggtggagtggtagcccctctctcagttccttaca |
527 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||| |
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| T |
33086866 |
cattatttggtggagtggtagctcctctctcagttccttaca |
33086907 |
T |
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