View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20640_high_10 (Length: 233)
Name: NF20640_high_10
Description: NF20640
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20640_high_10 |
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Alignment Details
Target: chr6 (Bit Score: 161; Significance: 5e-86; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 18 - 214
Target Start/End: Original strand, 5650028 - 5650224
Alignment:
| Q |
18 |
actttgtaactatatttgattattttccataaaagattccaaccttttacaatttcacacattcatttttaatatactaccattttctacacacaatgct |
117 |
Q |
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| T |
5650028 |
actttctaactatatttgattattttccataaaagattctaaccttttacaatttcacacattcatttttaatatactaccattttctacacacaatgct |
5650127 |
T |
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| Q |
118 |
atgcagctttttcgagaagaacatgactattaatattattaagagtannnnnnnnagaggatgggtattaagagaaatgttggtgaataatgatacc |
214 |
Q |
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| T |
5650128 |
atgcagctttttcgagaagaacatgactattaatattagtaagagtatttttttcagaggatgggtattaagagaaatgttggtgaataatgatacc |
5650224 |
T |
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