View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20640_high_3 (Length: 482)
Name: NF20640_high_3
Description: NF20640
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20640_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 394; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 10 - 459
Target Start/End: Complemental strand, 6824762 - 6824309
Alignment:
| Q |
10 |
aagaatatcaataatgtgtatggatgttcataaaataccaatttatacatgaatgtgttcaactctaatttctcatccctccaaacgttattaacattag |
109 |
Q |
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| T |
6824762 |
aagaaaatcaataatgtgtatggatgttcataaaataccaatttatacatgaatgtgttcaactctaatttctcatccctcctaacgttattaacattag |
6824663 |
T |
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| Q |
110 |
ttacgagtatatttggagaaaaaatgataaatgtatttagtaatttgaaatgcaatttatagttaggtagaatatgctctttcccaaggacactaacatt |
209 |
Q |
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| T |
6824662 |
ttacgagtatatttggagaaaaaatgataaatgtatttagtaatttgaaatgcaatttatagttaggtagaatatgctctttcccaaggacactaacatt |
6824563 |
T |
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| Q |
210 |
aggggacaatgatagaaaattcataatcaatcatttcaattagattttggacaccaacattaggttactatt----ctaactgtatcgaaattataaaca |
305 |
Q |
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| T |
6824562 |
aggg-acaaggatagtaaattcataatcaatcatttcaattagattttggacaccaacattaggttactatgactcctaactgtatcgaaattacaaaca |
6824464 |
T |
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| Q |
306 |
catatgtaagtgtttgttttgtgagtaattttattgaccaatctaactaacaaaagacaaattgaatgatcaaactaaataacaaaagt-atgttcatgt |
404 |
Q |
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| T |
6824463 |
catatgtaagtgtttgttttgtgagtaattttatggaccaatctaactaacaaaagacaaattgaatgatcaaactaaataacaaaagtcatgttcatgt |
6824364 |
T |
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| Q |
405 |
atgtttttgtaattttgatacatgcaaagattatagcgaaaacacatcacacatt |
459 |
Q |
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| T |
6824363 |
atgtttttgtaattttgatacatgcaaagattatagcgaaaacacatcacacatt |
6824309 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 28 - 86
Target Start/End: Complemental strand, 47973225 - 47973167
Alignment:
| Q |
28 |
tatggatgttcataaaataccaatttatacatgaatgtgttcaactctaatttctcatc |
86 |
Q |
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| T |
47973225 |
tatggaagttcgtaaaataccattttgtatatgagtgtgttcaactctgatttctcatc |
47973167 |
T |
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