View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20640_high_6 (Length: 324)

Name: NF20640_high_6
Description: NF20640
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20640_high_6
NF20640_high_6
[»] chr1 (1 HSPs)
chr1 (16-309)||(47760770-47761063)


Alignment Details
Target: chr1 (Bit Score: 273; Significance: 1e-152; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 16 - 309
Target Start/End: Original strand, 47760770 - 47761063
Alignment:
Q  16 tatactaggctttcttctttttctgaggagatttcatactagacttttaaaagatattaatcaaacttagacatgaaaattccgatttttgaatctacat 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47760770 tatactaggctttcttctttttctgaggagatttcatactagacttttaaaagatattaatcaaacttagacatgaaaattccgatttttgaatctacat 47760869  T
Q  116 cattcgatcttgatccaacaccaacagtctccaatgtcatgaatgagtgtttttatgaaccttttctttgaaagtggcaatgaagatatcagagcagtta 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47760870 cattcgatcttgatccaacaccaacagtctccaatgtcatgaatgagtgtttttatgaaccttttctttgaaagtggcaatgaagatatcagagcagtta 47760969  T
Q  216 gctctcgaagctgtttttcctccacgagaatcatactatacnnnnnnnccttcatgctggggtacagtttggccgcgtcaattgcctagttagt 309  Q
    |||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||    
T  47760970 gctctcgaagctgtttttcctccacgagaatcatactatactttttttccttcatgctggggtacagtttggccgcgtcaattgcctagttagt 47761063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University