View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20640_high_9 (Length: 241)
Name: NF20640_high_9
Description: NF20640
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20640_high_9 |
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Alignment Details
Target: chr4 (Bit Score: 172; Significance: 1e-92; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 41612484 - 41612262
Alignment:
| Q |
1 |
aagttcaaaaatcctccata------tctcaaaataacaacaatagaaactnnnnnnnngaagagagaaaatacctttcaaaatacaagacaaagggtag |
94 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
41612484 |
aagttcaaaaatcctccataaccccatctcaaaataacaacaatagaaactaacaaaaagaagagagaaaatacctttcaaaatacaagacaaagggtag |
41612385 |
T |
|
| Q |
95 |
gagaagaagaaatgtagcaaaagaagtgtaaatgacaatggtaaaagattggagacctaaagacataagatacttcaagagcatagcatttccagcataa |
194 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41612384 |
gagaagaagaaatgtagcaaaagaagtgtaaatgacaatggtaaaagattggagacctaaagacataagatacttcaagagcatagcatttccagcataa |
41612285 |
T |
|
| Q |
195 |
acaaattgtacaccgatcaaccc |
217 |
Q |
| |
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|||||||||||||| |||||||| |
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| T |
41612284 |
acaaattgtacaccaatcaaccc |
41612262 |
T |
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